View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12894_low_1 (Length: 761)

Name: NF12894_low_1
Description: NF12894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12894_low_1
NF12894_low_1
[»] chr2 (32 HSPs)
chr2 (192-745)||(44614858-44615393)
chr2 (9-277)||(44623926-44624196)
chr2 (11-131)||(44614737-44614857)
chr2 (474-742)||(44624513-44624763)
chr2 (629-741)||(39472969-39473081)
chr2 (629-687)||(39138517-39138575)
chr2 (629-741)||(39152930-39153042)
chr2 (638-738)||(39216537-39216637)
chr2 (647-739)||(39396853-39396945)
chr2 (553-603)||(44749611-44749661)
chr2 (630-696)||(44895351-44895417)
chr2 (112-197)||(39137894-39137979)
chr2 (92-193)||(39152579-39152680)
chr2 (92-193)||(39459256-39459357)
chr2 (630-687)||(39604188-39604245)
chr2 (698-745)||(44749731-44749778)
chr2 (110-172)||(39161864-39161926)
chr2 (110-172)||(39207268-39207330)
chr2 (94-172)||(39389096-39389174)
chr2 (91-193)||(39397787-39397889)
chr2 (638-694)||(39196756-39196812)
chr2 (638-694)||(39223594-39223650)
chr2 (89-193)||(39370109-39370213)
chr2 (231-274)||(39414622-39414665)
chr2 (193-244)||(39421698-39421749)
chr2 (537-592)||(39473136-39473191)
chr2 (546-616)||(39387860-39387930)
chr2 (630-687)||(39099459-39099516)
chr2 (650-687)||(39144488-39144525)
chr2 (92-141)||(39468343-39468392)
chr2 (650-687)||(39493692-39493729)
chr2 (555-592)||(44895473-44895510)
[»] chr5 (4 HSPs)
chr5 (482-743)||(17060370-17060631)
chr5 (638-694)||(33562169-33562225)
chr5 (236-274)||(17059656-17059694)
chr5 (201-242)||(17059589-17059630)
[»] chr8 (4 HSPs)
chr8 (87-244)||(45342049-45342206)
chr8 (409-610)||(45342640-45342828)
chr8 (640-743)||(44950063-44950169)
chr8 (236-277)||(45342230-45342271)
[»] chr6 (2 HSPs)
chr6 (92-172)||(16113303-16113383)
chr6 (647-743)||(16114256-16114352)
[»] chr7 (3 HSPs)
chr7 (647-694)||(19808795-19808842)
chr7 (242-274)||(19808027-19808059)
chr7 (119-197)||(19807851-19807929)


Alignment Details
Target: chr2 (Bit Score: 405; Significance: 0; HSPs: 32)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 192 - 745
Target Start/End: Original strand, 44614858 - 44615393
Alignment:
Q  192 atttgatgaggaaaaagaatttggtaaatgttgctattcatctattttattgatgttgatatttttaataacctgatctacatatttnnnnnnnntaa-- 289  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||      
T  44614858 atttgatgaggaaaaagaatttggtaaatgttgctattcatctattttattgatgttgatatttttaataacctgatctacatatttaaaaaaaataaat 44614957  T
Q  290 --taatttaatgatgttaatgcagtacttgctattcaactattctatatcacacacataataatcctatttggagttttggatataatatttatcaacta 387  Q
      ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| ||||||||| |||||||| ||||||||              
T  44614958 aataatttaatgatgttaatgcagtacttgcaattcaactattctatatcacacaaataatagtcctatttgtagttttggctataatat---------- 44615047  T
Q  388 aacactactccaataattcactaaggttctatattgactttgaaactgttagtataatgtttttctttctcacatgctttcatagtatatatctttttta 487  Q
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44615048 ----------caataattcactaaggttctatattgactttgaaactgttagtataatgtttttctttctcacatgctttcatagtatatatctttttta 44615137  T
Q  488 attccttttgtcaccttcaatttttgttgcttaagtaaatatgatcaaagagcttgactatctgctttctaaatatgcagatacatctaacatggatgac 587  Q
    |||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||    
T  44615138 attcctt--gtcaccttcaatttttgttgcttaagtaaatatgatcaaagagcttgactatctgctatctaaatatgcagatatatctaacatggatgac 44615235  T
Q  588 caattcagtattaccattgatggcacaagcgaggaaattggcattctagataatttgcgagaatcatcagatccagcaaaacttgttttggatataatac 687  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44615236 caattcagtattaccattgatggcacaagcgaggaaattggcattctagataatttgcgagaatcatcagatccagcaaaacttgttttggatataatac 44615335  T
Q  688 taaaccctacgattccactgcctaggaaaggagacaaagctgtgattattgatgaagg 745  Q
    |||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||    
T  44615336 taaaccctacgattccactgcctaagaaaggagacaaagcggtgattattgatgaagg 44615393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 184; E-Value: 3e-99
Query Start/End: Original strand, 9 - 277
Target Start/End: Original strand, 44623926 - 44624196
Alignment:
Q  9 agcaaaggtagaggaatttgaaggaaaaatgcagcaaattgaaaaccaaactgaggacaatctcaaatctgtcaaagcactcgagttaaaagagaatcag 108  Q
    |||||||| |||| |||| |||| ||||||||||||| ||||||| |||  ||||||||||||||||||||||||||||||||| |||||||||||||||    
T  44623926 agcaaaggaagagaaattcgaagtaaaaatgcagcaatttgaaaatcaagttgaggacaatctcaaatctgtcaaagcactcgaattaaaagagaatcag 44624025  T
Q  109 attgaagtacaaatcaaggatcttgagtcaaagctgaataattttggtggacaactaaaggagcttgatctgacagagaaacaatttgatgaggaaaaag 208  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||  ||||||||||||||  |||||| |||||||    
T  44624026 attgaagtacaaatcaaggatcttaagtcaaagctgaataattttggtggacaaccaaaggagcttgagttgacagagaaacaacatgatgaagaaaaag 44624125  T
Q  209 aatttggtaaatgttgctattcatc--tattttattgatgttgatatttttaataacctgatctacatatt 277  Q
    |||||||||||||||||||||||||  | ||||||||||||||||||||||||||||| |||||| |||||    
T  44624126 aatttggtaaatgttgctattcatctttcttttattgatgttgatatttttaataaccagatctatatatt 44624196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 11 - 131
Target Start/End: Original strand, 44614737 - 44614857
Alignment:
Q  11 caaaggtagaggaatttgaaggaaaaatgcagcaaattgaaaaccaaactgaggacaatctcaaatctgtcaaagcactcgagttaaaagagaatcagat 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44614737 caaaggtagaggaatttgaaggaaaaatgcagcaaattgaaaaccaaactgaggacaatctcaaatctgtcaaagcactcgagttaaaagagaatcagat 44614836  T
Q  111 tgaagtacaaatcaaggatct 131  Q
    |||||||||||||||||||||    
T  44614837 tgaagtacaaatcaaggatct 44614857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 474 - 742
Target Start/End: Original strand, 44624513 - 44624763
Alignment:
Q  474 atatatcttttttaattccttttgtcaccttcaatttttgttgcttaagtaaatatgatcaaagagcttgactatctgctttctaaatatgcagatacat 573  Q
    |||||||||||| ||||||| |  ||||||||| ||||||||| ||  ||||||||||||| | ||||| |||||||||| |||||||||||||||||||    
T  44624513 atatatctttttgaattcctatgatcaccttcattttttgttgtttctgtaaatatgatcagaaagcttaactatctgctatctaaatatgcagatacat 44624612  T
Q  574 ctaacatggatgaccaattcagtattaccattgatggcacaagcgaggaaattggcattctagataatttgcgagaatcatcagatccagcaaaacttgt 673  Q
    || ||||||||||                  ||||||  |||| |||||||||| |||||| ||||||||||||||||||||||||||||||||| ||||    
T  44624613 cttacatggatga------------------tgatggagcaagtgaggaaattgacattcttgataatttgcgagaatcatcagatccagcaaaaattgt 44624694  T
Q  674 tttggatataatactaaaccctacgattccactgcctaggaaaggagacaaagctgtgattattgatga 742  Q
    ||||||||||||||| ||||| |  || ||||| |||| ||||||||||||||||||||||||||||||    
T  44624695 tttggatataatactgaaccccattatcccacttcctaagaaaggagacaaagctgtgattattgatga 44624763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 629 - 741
Target Start/End: Complemental strand, 39473081 - 39472969
Alignment:
Q  629 cattctagataatttgcgagaatcatcagatccagcaaaacttgttttggatataatactaaaccctacgattccactgcctaggaaaggagacaaagct 728  Q
    |||||||| | || ||| |||||||||||||||||||||| ||||| ||||||||||||| ||||| |  ||||||| |  || ||| |||||| | |||    
T  39473081 cattctagttgatctgcaagaatcatcagatccagcaaaatttgttctggatataatactgaacccgattattccacggtgtaagaagggagaccatgct 39472982  T
Q  729 gtgattattgatg 741  Q
    |||||||||||||    
T  39472981 gtgattattgatg 39472969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 629 - 687
Target Start/End: Original strand, 39138517 - 39138575
Alignment:
Q  629 cattctagataatttgcgagaatcatcagatccagcaaaacttgttttggatataatac 687  Q
    |||||||| |||| ||| |||||||||||||||||||||| ||||||||||||||||||    
T  39138517 cattctagttaatctgcaagaatcatcagatccagcaaaagttgttttggatataatac 39138575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 629 - 741
Target Start/End: Original strand, 39152930 - 39153042
Alignment:
Q  629 cattctagataatttgcgagaatcatcagatccagcaaaacttgttttggatataatactaaaccctacgattccactgcctaggaaaggagacaaagct 728  Q
    ||||||||||||  ||| |||||||||||||||||||||| |||| |||||||||||||  ||||| |  ||||||| |  || ||| |||||| | |||    
T  39152930 cattctagataacctgcaagaatcatcagatccagcaaaaattgtgttggatataatacagaacccaattattccacggtataagaacggagaccatgct 39153029  T
Q  729 gtgattattgatg 741  Q
    |||||||| ||||    
T  39153030 gtgattatagatg 39153042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 638 - 738
Target Start/End: Original strand, 39216537 - 39216637
Alignment:
Q  638 taatttgcgagaatcatcagatccagcaaaacttgttttggatataatactaaaccctacgattccactgcctaggaaaggagacaaagctgtgattatt 737  Q
    |||||||| ||| |||||||||||| ||| ||||||||||||||| ||||  |||||||| |||| | ||  || ||| |||||||| ||||||||||||    
T  39216537 taatttgctagactcatcagatccatcaagacttgttttggatatgatacagaaccctactattcaattgtgtaagaagggagacaatgctgtgattatt 39216636  T
Q  738 g 738  Q
    |    
T  39216637 g 39216637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 647 - 739
Target Start/End: Complemental strand, 39396945 - 39396853
Alignment:
Q  647 agaatcatcagatccagcaaaacttgttttggatataatactaaaccctacgattccactgcctaggaaaggagacaaagctgtgattattga 739  Q
    |||||||||||||||| ||| |||||||||||||||||||| |||||| |  |||||||||  || ||| |||||||| | |||| |||||||    
T  39396945 agaatcatcagatccatcaagacttgttttggatataatacaaaaccccattattccactgtgtaagaagggagacaatggtgtggttattga 39396853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 553 - 603
Target Start/End: Complemental strand, 44749661 - 44749611
Alignment:
Q  553 tttctaaatatgcagatacatctaacatggatgaccaattcagtattacca 603  Q
    |||||||||||||||||||||||||||||||||| |||| |||||| ||||    
T  44749661 tttctaaatatgcagatacatctaacatggatgatcaatacagtataacca 44749611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 630 - 696
Target Start/End: Complemental strand, 44895417 - 44895351
Alignment:
Q  630 attctagataatttgcgagaatcatcagatccagcaaaacttgttttggatataatactaaacccta 696  Q
    ||||||| || | |||||||||||||| |||| |||||||||||||||||||||||||  |||||||    
T  44895417 attctagttactctgcgagaatcatcaaatcctgcaaaacttgttttggatataatacagaacccta 44895351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 112 - 197
Target Start/End: Original strand, 39137894 - 39137979
Alignment:
Q  112 gaagtacaaatcaaggatcttgagtcaaagctgaataattttggtggacaactaaaggagcttgatctgacagagaaacaatttga 197  Q
    |||| ||| |||||||||| ||  ||||||||| |||| |||| ||||||| | ||||||| ||| ||||||||||||||||||||    
T  39137894 gaaggacagatcaaggatcctggttcaaagctggataaatttgatggacaattgaaggagcctgaactgacagagaaacaatttga 39137979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 92 - 193
Target Start/End: Original strand, 39152579 - 39152680
Alignment:
Q  92 agttaaaagagaatcagattgaagtacaaatcaaggatcttgagtcaaagctgaataattttggtggacaactaaaggagcttgatctgacagagaaaca 191  Q
    ||||||||||||| ||| |||||||| ||  ||||||||||||||||||||| |||||   || ||||||    ||||||| |||| |||||||||||||    
T  39152579 agttaaaagagaagcagcttgaagtagaagccaaggatcttgagtcaaagctaaataaacatgatggacagtcgaaggagcatgatttgacagagaaaca 39152678  T
Q  192 at 193  Q
    ||    
T  39152679 at 39152680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 92 - 193
Target Start/End: Original strand, 39459256 - 39459357
Alignment:
Q  92 agttaaaagagaatcagattgaagtacaaatcaaggatcttgagtcaaagctgaataattttggtggacaactaaaggagcttgatctgacagagaaaca 191  Q
    |||||||||| || ||  |||||| |||| |||||||||  ||||||||||| |||||||||| ||||||| | ||||||| |||  |||||| ||||||    
T  39459256 agttaaaagacaagcaatttgaaggacaagtcaaggatccagagtcaaagcttaataattttgatggacaagtgaaggagcctgagttgacagtgaaaca 39459355  T
Q  192 at 193  Q
    ||    
T  39459356 at 39459357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 630 - 687
Target Start/End: Original strand, 39604188 - 39604245
Alignment:
Q  630 attctagataatttgcgagaatcatcagatccagcaaaacttgttttggatataatac 687  Q
    |||||||||||| ||| || ||||||||||||| ||||| ||||||||||||||||||    
T  39604188 attctagataatctgcaaggatcatcagatccatcaaaagttgttttggatataatac 39604245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 698 - 745
Target Start/End: Original strand, 44749731 - 44749778
Alignment:
Q  698 gattccactgcctaggaaaggagacaaagctgtgattattgatgaagg 745  Q
    |||||||||||||| ||| || ||||||||||||||||||||||||||    
T  44749731 gattccactgcctaagaagggtgacaaagctgtgattattgatgaagg 44749778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 110 - 172
Target Start/End: Original strand, 39161864 - 39161926
Alignment:
Q  110 ttgaagtacaaatcaaggatcttgagtcaaagctgaataattttggtggacaactaaaggagc 172  Q
    |||||| |||| ||||||||| | |||||||| ||||||| |||| |||||||||||||||||    
T  39161864 ttgaaggacaagtcaaggatcctaagtcaaagatgaataaatttgatggacaactaaaggagc 39161926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 110 - 172
Target Start/End: Complemental strand, 39207330 - 39207268
Alignment:
Q  110 ttgaagtacaaatcaaggatcttgagtcaaagctgaataattttggtggacaactaaaggagc 172  Q
    |||||| |||| ||||||||| | |||||||| ||||||| |||| |||||||||||||||||    
T  39207330 ttgaaggacaagtcaaggatcctaagtcaaagatgaataaatttgatggacaactaaaggagc 39207268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 94 - 172
Target Start/End: Complemental strand, 39389174 - 39389096
Alignment:
Q  94 ttaaaagagaatcagattgaagtacaaatcaaggatcttgagtcaaagctgaataattttggtggacaactaaaggagc 172  Q
    |||||||| || ||| ||||||  ||| |||| |||| |||||||||||||||||| |||| ||||||| |||||||||    
T  39389174 ttaaaagaaaagcagtttgaagggcaagtcaacgatcctgagtcaaagctgaataaatttgatggacaaataaaggagc 39389096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 91 - 193
Target Start/End: Complemental strand, 39397889 - 39397787
Alignment:
Q  91 gagttaaaagagaatcagattgaagtacaaatcaaggatcttgagtcaaagctgaataattttggtggacaactaaaggagcttgatctgacagagaaac 190  Q
    |||||||||||||| ||| ||| ||  | | ||||||| |||||||||| |||| |||| |||| ||||||||| ||||||| |||  |||||| |||||    
T  39397889 gagttaaaagagaagcaggttgcaggtcgagtcaaggaacttgagtcaaggctggataaatttgatggacaactgaaggagcctgagttgacagggaaac 39397790  T
Q  191 aat 193  Q
    |||    
T  39397789 aat 39397787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 638 - 694
Target Start/End: Complemental strand, 39196812 - 39196756
Alignment:
Q  638 taatttgcgagaatcatcagatccagcaaaacttgttttggatataatactaaaccc 694  Q
    |||| ||| |||||||||||||||| |||||||||||||||| || ||||| |||||    
T  39196812 taatctgcaagaatcatcagatccatcaaaacttgttttggaaatgatactgaaccc 39196756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 638 - 694
Target Start/End: Original strand, 39223594 - 39223650
Alignment:
Q  638 taatttgcgagaatcatcagatccagcaaaacttgttttggatataatactaaaccc 694  Q
    |||| ||| |||||||||||||||| |||||||||||||||| || ||||| |||||    
T  39223594 taatctgcaagaatcatcagatccatcaaaacttgttttggaaatgatactgaaccc 39223650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 89 - 193
Target Start/End: Original strand, 39370109 - 39370213
Alignment:
Q  89 tcgagttaaaagagaatcagattgaagtacaaatcaaggatcttgagtcaaagctgaataattttggtggacaactaaaggagcttgatctgacagagaa 188  Q
    |||| ||||||||||| ||| ||| |  |||| |||||| ||||||||||||| ||||||| || | ||||||||||||| ||| |||   |||| ||||    
T  39370109 tcgaattaaaagagaagcagtttggaagacaagtcaagggtcttgagtcaaagatgaataaattggatggacaactaaagaagcctgagtcgacaaagaa 39370208  T
Q  189 acaat 193  Q
    |||||    
T  39370209 acaat 39370213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 231 - 274
Target Start/End: Complemental strand, 39414665 - 39414622
Alignment:
Q  231 atctattttattgatgttgatatttttaataacctgatctacat 274  Q
    ||||| |||| ||||||||||||||||||||| |||||||||||    
T  39414665 atctagtttaatgatgttgatatttttaataatctgatctacat 39414622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 193 - 244
Target Start/End: Complemental strand, 39421749 - 39421698
Alignment:
Q  193 tttgatgaggaaaaagaatttggtaaatgttgctattcatctattttattga 244  Q
    |||||||||||||| |||| |||||||||||  |||||||||| ||||||||    
T  39421749 tttgatgaggaaaatgaatctggtaaatgttcttattcatctaatttattga 39421698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 537 - 592
Target Start/End: Complemental strand, 39473191 - 39473136
Alignment:
Q  537 gagcttgactatctgctttctaaatatgcagatacatctaacatggatgaccaatt 592  Q
    |||||| | |||||||| ||||||||||||| ||||||| |||||||||| |||||    
T  39473191 gagcttaaatatctgctatctaaatatgcagctacatcttacatggatgatcaatt 39473136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 546 - 616
Target Start/End: Complemental strand, 39387930 - 39387860
Alignment:
Q  546 tatctgctttctaaatatgcagatacatctaacatggatgaccaattcagtattaccattgatggcacaag 616  Q
    |||||||||||||||||||||| |  |||| |||||||||| ||||| |||  |||||||| ||| |||||    
T  39387930 tatctgctttctaaatatgcagttgaatcttacatggatgatcaattaagtcgtaccattggtggaacaag 39387860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 630 - 687
Target Start/End: Original strand, 39099459 - 39099516
Alignment:
Q  630 attctagataatttgcgagaatcatcagatccagcaaaacttgttttggatataatac 687  Q
    |||||||||||| ||| || || |||||||||| ||||| | ||||||||||||||||    
T  39099459 attctagataatctgcaaggattatcagatccatcaaaagtcgttttggatataatac 39099516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 650 - 687
Target Start/End: Original strand, 39144488 - 39144525
Alignment:
Q  650 atcatcagatccagcaaaacttgttttggatataatac 687  Q
    ||||||||||||| ||||| ||||||||||||||||||    
T  39144488 atcatcagatccatcaaaagttgttttggatataatac 39144525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 141
Target Start/End: Original strand, 39468343 - 39468392
Alignment:
Q  92 agttaaaagagaatcagattgaagtacaaatcaaggatcttgagtcaaag 141  Q
    ||||||||||||| |||||||||| |||| ||||||| ||| ||||||||    
T  39468343 agttaaaagagaagcagattgaaggacaagtcaaggaacttcagtcaaag 39468392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 650 - 687
Target Start/End: Complemental strand, 39493729 - 39493692
Alignment:
Q  650 atcatcagatccagcaaaacttgttttggatataatac 687  Q
    ||||||||||||| ||||| ||||||||||||||||||    
T  39493729 atcatcagatccatcaaaagttgttttggatataatac 39493692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 555 - 592
Target Start/End: Complemental strand, 44895510 - 44895473
Alignment:
Q  555 tctaaatatgcagatacatctaacatggatgaccaatt 592  Q
    ||||||||||||| |||||||||||||||||| |||||    
T  44895510 tctaaatatgcagttacatctaacatggatgatcaatt 44895473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 102; Significance: 3e-50; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 482 - 743
Target Start/End: Original strand, 17060370 - 17060631
Alignment:
Q  482 tttttaattccttttgtcaccttcaatttttgttgcttaagtaaatatgatcaaagagcttgactatctgctttctaaatatgcagatacatctaacatg 581  Q
    |||||||||||| |||  ||| ||| || |||||||||| |||||||||||   ||||||| | |||||  | ||||||||||||||||||||| |||||    
T  17060370 tttttaattcctattgaaaccctcatttattgttgcttatgtaaatatgatatgagagcttaagtatcttttatctaaatatgcagatacatcttacatg 17060469  T
Q  582 gatgaccaattcagtattaccattgatggcacaagcgaggaaattggcattctagataatttgcgagaatcatcagatccagcaaaacttgttttggata 681  Q
    |||||  |||| |||||||||||||||||  |||| ||||||  || |||||||| |||||||| ||||||||| |||||| ||||| |||||||||||     
T  17060470 gatgatgaattaagtattaccattgatggagcaagtgaggaatctgacattctagttaatttgcaagaatcatcggatccatcaaaaattgttttggatg 17060569  T
Q  682 taatactaaaccctacgattccactgcctaggaaaggagacaaagctgtgattattgatgaa 743  Q
    ||||| | ||||| |  |||||||| |||| ||| |||||||||| ||||||||||||||||    
T  17060570 taataatgaaccccattattccactacctaagaagggagacaaagttgtgattattgatgaa 17060631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 638 - 694
Target Start/End: Original strand, 33562169 - 33562225
Alignment:
Q  638 taatttgcgagaatcatcagatccagcaaaacttgttttggatataatactaaaccc 694  Q
    |||| ||| |||||||||||||||| |||||||||||||||| || ||||| |||||    
T  33562169 taatctgcaagaatcatcagatccatcaaaacttgttttggaaatgatactgaaccc 33562225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 236 - 274
Target Start/End: Original strand, 17059656 - 17059694
Alignment:
Q  236 ttttattgatgttgatatttttaataacctgatctacat 274  Q
    |||||||||||||| ||||||||||| ||||||||||||    
T  17059656 ttttattgatgttgctatttttaatatcctgatctacat 17059694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 201 - 242
Target Start/End: Original strand, 17059589 - 17059630
Alignment:
Q  201 ggaaaaagaatttggtaaatgttgctattcatctattttatt 242  Q
    |||||| ||||||||||||||||| |||||||||| ||||||    
T  17059589 ggaaaatgaatttggtaaatgttgttattcatctagtttatt 17059630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 94; Significance: 2e-45; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 87 - 244
Target Start/End: Original strand, 45342049 - 45342206
Alignment:
Q  87 actcgagttaaaagagaatcagattgaagtacaaatcaaggatcttgagtcaaagctgaataattttggtggacaactaaaggagcttgatctgacagag 186  Q
    |||| ||||||||||||||||| ||||||| ||||||||||| ||||||||||||||||||||||| | ||||||| |||||||||||||  ||||| ||    
T  45342049 actccagttaaaagagaatcagtttgaagtgcaaatcaaggaccttgagtcaaagctgaataatttggatggacaaataaaggagcttgagttgacaaag 45342148  T
Q  187 aaacaatttgatgaggaaaaagaatttggtaaatgttgctattcatctattttattga 244  Q
    |||||||  ||||||||||||||||||||||||  ||| |||||||||| ||||||||    
T  45342149 aaacaatacgatgaggaaaaagaatttggtaaaatttgttattcatctagtttattga 45342206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 409 - 610
Target Start/End: Original strand, 45342640 - 45342828
Alignment:
Q  409 taaggttctatattgactttgaaactgttagtataatgtttttctttctcacatgctttcatagtatatatcttttttaattccttttgtcaccttcaat 508  Q
    ||||||||||||||||||||| || ||||||||||||| ||| ||          |||||| ||||||||| ||||||||||||| |||||||||| | |    
T  45342640 taaggttctatattgactttgtaattgttagtataatgctttcct----------ctttcacagtatatatattttttaattcctattgtcacctttatt 45342729  T
Q  509 ttttgttgcttaagtaaatatgatcaaagagcttgactatctgctttctaaatatgcagatacatctaacatggatgaccaattcagtattaccattgat 608  Q
    | ||| | |||| |||||||||   | ||||||| | |||||||| ||||||||   ||  |||||| |||||||||| ||||| |||| ||||||||||    
T  45342730 tattggttcttatgtaaatatg---agagagcttaaatatctgctatctaaatacttagtcacatcttacatggatgatcaattaagtactaccattgat 45342826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 640 - 743
Target Start/End: Complemental strand, 44950169 - 44950063
Alignment:
Q  640 atttgcgagaatcatcagatccagcaaaacttgttttggatataatacta---aaccctacgattccactgcctaggaaaggagacaaagctgtgattat 736  Q
    ||||||||||||||||||||  ||| ||| ||||||||||||||||||||    |||| |   ||||| |||||| ||| ||||||||||||||||||||    
T  44950169 atttgcgagaatcatcagatatagcgaaaattgttttggatataatactagacgaccccatatttccattgcctaagaagggagacaaagctgtgattat 44950070  T
Q  737 tgatgaa 743  Q
    |||||||    
T  44950069 tgatgaa 44950063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 236 - 277
Target Start/End: Original strand, 45342230 - 45342271
Alignment:
Q  236 ttttattgatgttgatatttttaataacctgatctacatatt 277  Q
    |||| |||||||||||||||||||||||||||||||||||||    
T  45342230 ttttgttgatgttgatatttttaataacctgatctacatatt 45342271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 1e-18; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 92 - 172
Target Start/End: Original strand, 16113303 - 16113383
Alignment:
Q  92 agttaaaagagaatcagattgaagtacaaatcaaggatcttgagtcaaagctgaataattttggtggacaactaaaggagc 172  Q
    ||||||||||||| ||||||||||||||| ||||||| |||||||||||||||||  | ||||| |||||||| |||||||    
T  16113303 agttaaaagagaagcagattgaagtacaagtcaaggagcttgagtcaaagctgaacgaatttggcggacaactgaaggagc 16113383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 647 - 743
Target Start/End: Original strand, 16114256 - 16114352
Alignment:
Q  647 agaatcatcagatccagcaaaacttgttttggatataatactaaaccctacgattccactgcctaggaaaggagacaaagctgtgattattgatgaa 743  Q
    ||||||| |||||||| ||| ||||||||||||||||||||  |||||    | |||||||  || ||| |||||||| ||||||||||||||||||    
T  16114256 agaatcagcagatccatcaagacttgttttggatataatacagaaccccggtactccactgtgtaagaagggagacaatgctgtgattattgatgaa 16114352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000007; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 647 - 694
Target Start/End: Original strand, 19808795 - 19808842
Alignment:
Q  647 agaatcatcagatccagcaaaacttgttttggatataatactaaaccc 694  Q
    |||||||||||||||| ||||| |||||||||||||||||| ||||||    
T  19808795 agaatcatcagatccaacaaaagttgttttggatataatacaaaaccc 19808842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 242 - 274
Target Start/End: Original strand, 19808027 - 19808059
Alignment:
Q  242 tgatgttgatatttttaataacctgatctacat 274  Q
    |||||||||||||||||||||||||||||||||    
T  19808027 tgatgttgatatttttaataacctgatctacat 19808059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 119 - 197
Target Start/End: Original strand, 19807851 - 19807929
Alignment:
Q  119 aaatcaaggatcttgagtcaaagctgaataattttggtggacaactaaaggagcttgatctgacagagaaacaatttga 197  Q
    |||||||||||| ||  ||||||||| |||| |||| ||||||| | ||||||  |||  |||||||||||||||||||    
T  19807851 aaatcaaggatcctggttcaaagctggataaatttgatggacaattgaaggagtctgagttgacagagaaacaatttga 19807929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University