View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12894_low_2 (Length: 332)

Name: NF12894_low_2
Description: NF12894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12894_low_2
NF12894_low_2
[»] chr6 (1 HSPs)
chr6 (15-310)||(23935603-23935896)


Alignment Details
Target: chr6 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 15 - 310
Target Start/End: Original strand, 23935603 - 23935896
Alignment:
Q  15 acatcaacaacaagaaacctaaacacaaacaaaatgaagaacacggaaactacattatgaatatatatgctaaatttacgaagatattctttctcatttt 114  Q
    |||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||  ||||    
T  23935603 acataaacaacaagaaacctaaacacaaacaaaatgaagaacacagaaactacattatgaatatatatgctaaatttacgacgatattctttct--tttt 23935700  T
Q  115 cttctttgaaagaatt-tttgaacctgaataagaaacttttgtgtaacaggtttttggttacattggtcataaacgaaaaaagaagaaaagatgagaatg 213  Q
    ||||| |||| ||||  ||||||||||||  ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  23935701 cttctatgaacgaatgctttgaacctgaaatagaaacttttgtgtaacag-tttttggttacattggtcataaacgaaaaaagaagaaaagatgagaatg 23935799  T
Q  214 ttaccaagtttagtgatgaaaaaggaattgaatggctttcttttttctcaagaaaatgaaaatggggttttccaggaaaatgcaggtttgtgaattt 310  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23935800 ttaccaagtttagtgatgaaaaaggaattgaatggctttcttttttctcaagaaaatgaaaatggggttttccaggaaaatgcaggtttgtgaattt 23935896  T

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