View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12895_high_1 (Length: 550)
Name: NF12895_high_1
Description: NF12895
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12895_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 498; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 498; E-Value: 0
Query Start/End: Original strand, 13 - 533
Target Start/End: Original strand, 39956361 - 39956882
Alignment:
| Q |
13 |
gagatgaaccctgagaagaagggcctaaagccggtggcatagactcggatggtggaaaagccgaaacaggaccttgatgagttgagatatctggatttgg |
112 |
Q |
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| T |
39956361 |
gagatgaaccctgagaagaagggcctaaagccggtggcatagactcggatggtggaaaagccgaaacaggaccttgatgagttgagatatctggatttgg |
39956460 |
T |
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| Q |
113 |
agggctaggacttgaaggaattgttggtaatgaagaatccgatggagagtaagcaactcctccaggggaaggaaacagtggctccatatctggtgacatt |
212 |
Q |
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| T |
39956461 |
agggctaggacttgaaggaattgttggtaatgaagaatccgatggagagtaagcaactcctccaggggaaggaaacagtggctccatatctggtgacatt |
39956560 |
T |
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| Q |
213 |
gcaggagaaaagagaggagcttctggtaatgtagttggtgctgctgagattgttgaaatatgcatggtttttgcagaagccaaagctaatgaacaattgc |
312 |
Q |
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| T |
39956561 |
gcaggagaaaagagaggagcttctggtaatgtagttggtgctgctgagattgttgaaatatgcatggtttttgcagaagccaaagctaatgaacaattgc |
39956660 |
T |
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| Q |
313 |
atgctattaaggctaggaatattgatgagaatgaccagagggaagccataaatgatgatagat-aaaattaattaatttatgatagactctttttgcagt |
411 |
Q |
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| T |
39956661 |
atgctattaaggctaggaatattgatgagaatgaccaaaaggaagccataaatgatgatagataaaaattaattaatttatgatgtactctttttgcagt |
39956760 |
T |
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| Q |
412 |
tcttaatgaaatgtgtccgagagagagaaatgttcttgaggaagtttatgattgaagtatagaacttacaaaagggtgtataagaagtggtggtgggcac |
511 |
Q |
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| T |
39956761 |
tcttaatgaaatgtgtccgagagagagaaatgttcttgaggaagtttatgattgaagtatagaacttacaaaagggtgtataagaagtggtggtgggcac |
39956860 |
T |
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| Q |
512 |
aaattttttagtggtagttgat |
533 |
Q |
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| T |
39956861 |
aaattttttagtggtagttgat |
39956882 |
T |
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