View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12895_high_10 (Length: 261)
Name: NF12895_high_10
Description: NF12895
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12895_high_10 |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 16 - 245
Target Start/End: Original strand, 24277996 - 24278229
Alignment:
| Q |
16 |
tgtggctacattactattc----attcattcaagatatttctttcaataaaatattcttccatgtttgaaccatgtagtcttctcttatccatcttcggt |
111 |
Q |
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| T |
24277996 |
tgtggctacattactattcattcattcattcaagatatttatttcaataaaatattcttccatgtttgaaccatgtagtcttctcttatccatcttcggt |
24278095 |
T |
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| Q |
112 |
gtggtgcacatgtttgataccattcattgtttcttttttgaaaagtaggacatcaattataaagacactttctgtaacagttgtgaccaattttgctgat |
211 |
Q |
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| T |
24278096 |
gtggtgcacatgtttgataccatccattgtttcttttttgaaaagtaggacatcaattataaagacactttctgtaacagttgtgaccaattttgctgat |
24278195 |
T |
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| Q |
212 |
tctccctagcaattatctgtttggtgcacacatt |
245 |
Q |
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| T |
24278196 |
tctccctagcaattatctgtttggtgtacacatt |
24278229 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 25 - 164
Target Start/End: Original strand, 325537 - 325676
Alignment:
| Q |
25 |
attactattcattcattcaagatatttctttcaataaaatattcttccatgtttgaaccatgtagtcttctcttatccatcttcggtgtggtgcacatgt |
124 |
Q |
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||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||| |
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| T |
325537 |
attactattcattcattcaagatatttattttaataaaatattcttccatgtttgaatcatgtagtcttcttttatccatcttcggtgtggtgcacatgt |
325636 |
T |
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| Q |
125 |
ttgataccattcattgtttcttttttgaaaagtaggacat |
164 |
Q |
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| T |
325637 |
ttgataccatccattgtttcttttttgaaaagtaggacat |
325676 |
T |
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