View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12895_high_11 (Length: 261)
Name: NF12895_high_11
Description: NF12895
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12895_high_11 |
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| [»] scaffold0620 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 128; Significance: 3e-66; HSPs: 10)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 114 - 245
Target Start/End: Original strand, 34115454 - 34115585
Alignment:
| Q |
114 |
gcgaagatgtcacatgttgatgttgttgctgaaattcgaagcggcatgaataatgcgaagtgtgcctatgatttaaagactgaggcaagtttttcttttt |
213 |
Q |
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| T |
34115454 |
gcgaagatgtcacatgttgatgttgttgctgaaattcgaagcggcatgaataatgcgaagtgtgcctatgatttaaagactgaggcaagtttttcttttt |
34115553 |
T |
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| Q |
214 |
ctgaaaatgttaacaaagtttatagttccgac |
245 |
Q |
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| T |
34115554 |
ctggaaatgttaacaaagtttatagttccgac |
34115585 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 117 - 204
Target Start/End: Original strand, 34149756 - 34149843
Alignment:
| Q |
117 |
aagatgtcacatgttgatgttgttgctgaaattcgaagcggcatgaataatgcgaagtgtgcctatgatttaaagactgaggcaagtt |
204 |
Q |
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| T |
34149756 |
aagatgtcacatgttgatgtcgttgctgaaattcgaagaggcatgaatgatgcaaagtgtgcgtatgatataaaaactgaggcaagtt |
34149843 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 117 - 204
Target Start/End: Original strand, 34162372 - 34162459
Alignment:
| Q |
117 |
aagatgtcacatgttgatgttgttgctgaaattcgaagcggcatgaataatgcgaagtgtgcctatgatttaaagactgaggcaagtt |
204 |
Q |
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| T |
34162372 |
aagatgtcacatgttgatgtcgttgctgaaattcgaagaggcatgaatgatgcaaagtgtgcgtatgatataaaaactgaggcaagtt |
34162459 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 114 - 205
Target Start/End: Original strand, 34169583 - 34169674
Alignment:
| Q |
114 |
gcgaagatgtcacatgttgatgttgttgctgaaattcgaagcggcatgaataatgcgaagtgtgcctatgatttaaagactgaggcaagttt |
205 |
Q |
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| T |
34169583 |
gcgaagatgttacatgttgctgtcattgctgaaattcaaagcggcatgaaaaatgtgaagtgtgcatatgatttaaaaactgaggcatgttt |
34169674 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 118 - 207
Target Start/End: Original strand, 34091754 - 34091843
Alignment:
| Q |
118 |
agatgtcacatgttgatgttgttgctgaaattcgaagcggcatgaataatgcgaagtgtgcctatgatttaaagactgaggcaagttttt |
207 |
Q |
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| T |
34091754 |
agatgtcgcatgatgatgtcgtagctgaaattaaaagcggcttgaaaaaggcgaagtgtgcgtttgatataaaaactgaggcaagttttt |
34091843 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 118 - 207
Target Start/End: Original strand, 34106598 - 34106687
Alignment:
| Q |
118 |
agatgtcacatgttgatgttgttgctgaaattcgaagcggcatgaataatgcgaagtgtgcctatgatttaaagactgaggcaagttttt |
207 |
Q |
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| T |
34106598 |
agatgtcacatgatgatgtcctagctgaaattaaaagcggcatgaaaaaggcgaagtgtgcgtttgatataaaaaccgaggtaagttttt |
34106687 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 114 - 190
Target Start/End: Original strand, 34109482 - 34109558
Alignment:
| Q |
114 |
gcgaagatgtcacatgttgatgttgttgctgaaattcgaagcggcatgaataatgcgaagtgtgcctatgatttaaa |
190 |
Q |
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| T |
34109482 |
gcgaagatgtcgcatgatgatgtccttgctgaaattaaaagcggcatgaaaaaggcgaactgtgcgtttgatttaaa |
34109558 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 116 - 204
Target Start/End: Original strand, 34120079 - 34120167
Alignment:
| Q |
116 |
gaagatgtcacatgttgatgttgttgctgaaattcgaagcggcatgaataatgcgaagtgtgcctatgatttaaagactgaggcaagtt |
204 |
Q |
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| T |
34120079 |
gaagatgtcgcatgatgatgtcctttgtgaaattaaaagcggcatgaaaaaggcgaagtgcgcatatgatttaaaaaccgaggcaagtt |
34120167 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 116 - 204
Target Start/End: Original strand, 34147240 - 34147328
Alignment:
| Q |
116 |
gaagatgtcacatgttgatgttgttgctgaaattcgaagcggcatgaataatgcgaagtgtgcctatgatttaaagactgaggcaagtt |
204 |
Q |
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| T |
34147240 |
gaagatgtcgcatgatgatgtcctttgtgaaattaaaagcggcatgaaaaaggcgaagtgcgcatatgatttaaaaaccgaggcaagtt |
34147328 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 116 - 204
Target Start/End: Original strand, 34159856 - 34159944
Alignment:
| Q |
116 |
gaagatgtcacatgttgatgttgttgctgaaattcgaagcggcatgaataatgcgaagtgtgcctatgatttaaagactgaggcaagtt |
204 |
Q |
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| T |
34159856 |
gaagatgtcgcatgatgatgtcctttgtgaaattaaaagcggcatgaaaaaggcgaagtgcgcatatgatttaaaaaccgaggcaagtt |
34159944 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0620 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0620
Description:
Target: scaffold0620; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 118 - 207
Target Start/End: Original strand, 7088 - 7177
Alignment:
| Q |
118 |
agatgtcacatgttgatgttgttgctgaaattcgaagcggcatgaataatgcgaagtgtgcctatgatttaaagactgaggcaagttttt |
207 |
Q |
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| T |
7088 |
agatgtcgcatgatgatgtcgtagctgaaattaaaagcggcttgaaaaaggcgaagtgtgcgtttgatataaaaactgaggcaagttttt |
7177 |
T |
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