View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12895_high_12 (Length: 253)
Name: NF12895_high_12
Description: NF12895
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12895_high_12 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 171; Significance: 6e-92; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 79 - 253
Target Start/End: Original strand, 394538 - 394712
Alignment:
| Q |
79 |
tagaaagtagaaacacaccaaacgtcttcctcctgcgctgccgtaccccaccccaccgtcctccactgttcataaaaccatggaggctctgaaggaactc |
178 |
Q |
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| T |
394538 |
tagaaagtagaaacacaccaaacgtcttcctcctgcgctgccgtacctcaccccaccgtcctccactgttcataaaaccatggaggctctgaaggaactc |
394637 |
T |
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| Q |
179 |
cttccggaaccaaaatcatctacagcaacatactatcaccatagctacgatccttggtttaagcaactgttcacc |
253 |
Q |
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| T |
394638 |
cttccggaaccaaaatcatctacagcaacatactatcaccatagctacgatccttggtttaagcaactgttcacc |
394712 |
T |
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Target: chr2; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 154 - 244
Target Start/End: Complemental strand, 11456204 - 11456114
Alignment:
| Q |
154 |
aaccatggaggctctgaaggaactccttccggaaccaaaatcatctacagcaacatactatcaccatagctacgatccttggtttaagcaa |
244 |
Q |
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| T |
11456204 |
aaccatggcggctctgaaggaactccttccagaaccaaaatcatccacaacaacatactatgatcatagcaacgatccatggtttaagcaa |
11456114 |
T |
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