View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12895_high_13 (Length: 233)
Name: NF12895_high_13
Description: NF12895
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12895_high_13 |
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Alignment Details
Target: chr2 (Bit Score: 143; Significance: 3e-75; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 74 - 216
Target Start/End: Complemental strand, 38419565 - 38419423
Alignment:
| Q |
74 |
tatctgagtatttgagacaaggcacttgatcgccttgcatcaggcatacttcaccgtatctgagtatttgagagacaatggcgtactttgtctcaaaaac |
173 |
Q |
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| T |
38419565 |
tatctgagtatttgagacaaggcacttgatcgccttgcatcaggcatacttcaccgtatctgagtatttgagagacaatggcgtactttgtctcaaaaac |
38419466 |
T |
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| Q |
174 |
ctaattaatttcaaaataattcatcttagttgatgattacttg |
216 |
Q |
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| T |
38419465 |
ctaattaatttcaaaataattcatcttagttgatgattacttg |
38419423 |
T |
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Target: chr2; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 15 - 77
Target Start/End: Complemental strand, 38420223 - 38420161
Alignment:
| Q |
15 |
atgaaaatataatttgctaatctactattgtttcatcatcctccttggcagacaaaccatatc |
77 |
Q |
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| T |
38420223 |
atgaaaatataatttgctaatctactattgtttcatcatcctccttggcagacaaaccatatc |
38420161 |
T |
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