View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12895_high_3 (Length: 452)
Name: NF12895_high_3
Description: NF12895
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12895_high_3 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 402; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 18 - 431
Target Start/End: Complemental strand, 49203305 - 49202892
Alignment:
| Q |
18 |
attatctgtcaaccaatggtatggaacattatatgccaccaccgtgttgaactaaaactaaaaaatttcaagtttgcatatggtggtgcctaacagacag |
117 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
49203305 |
attatctatcaaccaatggtatggaacattatatgccaccaccgtgttgaactaaaactaaaaaattttaagtttgcatatggtggtgcctaacagacag |
49203206 |
T |
|
| Q |
118 |
atgactggcaacttgataggcacgacaaaatgaaaaattaactatgttattcatattatactgcaatgtatgtccacagaaaatggccactgtttcttca |
217 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49203205 |
atgactggcaacttgataggcacgaaaaaatgaaaaattaactatgttattcatattatactgcaatgtatgtccacagaaaatggccactgtttcttca |
49203106 |
T |
|
| Q |
218 |
taatccaagtaacttgtgagagagagattcatgataaaaactttgaaggaaagtagctcactcttagaggtggaggtatgttttcaattccactgggcac |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49203105 |
taatccaagtaacttgtgagagagagattcatgataaaaactttgaaggaaagtagctcactcttagaggtggaggtatgttttcaattccactgggcac |
49203006 |
T |
|
| Q |
318 |
cctatcttttagcacattaatttggttggacggatcctgtttgatatcaccatttactggtagcaaaactggtgaagatggtgggctgatgaggactacc |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49203005 |
cctatcttttagcacattaatttggttggacggatcctgtttgatatcaccatttactggtagcaaaactggtgaagatggtgggctgatgaggactacc |
49202906 |
T |
|
| Q |
418 |
ttcagtttcttctc |
431 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
49202905 |
ttcagtttcttctc |
49202892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University