View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12895_high_6 (Length: 391)
Name: NF12895_high_6
Description: NF12895
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12895_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 1 - 374
Target Start/End: Original strand, 45461579 - 45461973
Alignment:
| Q |
1 |
taggtggccgtatatgctgctggctgaaaatatgttgttaattaaatttccgaaaggtataaacaatttgtcatgtaatatattaattaaccgaaagcaa |
100 |
Q |
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| T |
45461579 |
taggtggccgtatatgctgctggctgaaaataggttgttaattaaatttccgaaaggtataaacaatttgtcatgtaatat--taattaaccgaaagcaa |
45461676 |
T |
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| Q |
101 |
atattgacactgatcatcata-------------gttggttggttgttatctgttgttaattatctataataaccatccatccaaaaataataaaattaa |
187 |
Q |
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| T |
45461677 |
atattgacactgatcatcatcataataaaacatggttggttggttgttatttgttgttaattatctataataaccatccatccaaaaataataaaattaa |
45461776 |
T |
|
| Q |
188 |
ttaagaagcaaaagtcgtacaaattaaagag----------aggggaagcaagatgaaaatgaaatgagtaccgtttttgctgtggttgatacgggtaga |
277 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
45461777 |
ttaagaagcaaaagtcgtacaaattaaagagcatgaaattgaggggaagcaagatgaaaatgaaatgagtaccgtttttgcggtggttgatacgggtaga |
45461876 |
T |
|
| Q |
278 |
gagagcaagacatagacgcctgacagggaaaatcatagtttgccaaatatgcatgattttgttcttgtctttaacaactccttcacatagtactact |
374 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45461877 |
gagagcaagacatagacgcctgacagggaaaatcatagtttgccaaatatgcatgattttgttcttgtctttaacaactccttcacatagtactact |
45461973 |
T |
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