View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12895_low_12 (Length: 261)

Name: NF12895_low_12
Description: NF12895
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12895_low_12
NF12895_low_12
[»] chr6 (10 HSPs)
chr6 (114-245)||(34115454-34115585)
chr6 (117-204)||(34149756-34149843)
chr6 (117-204)||(34162372-34162459)
chr6 (114-205)||(34169583-34169674)
chr6 (118-207)||(34091754-34091843)
chr6 (118-207)||(34106598-34106687)
chr6 (114-190)||(34109482-34109558)
chr6 (116-204)||(34120079-34120167)
chr6 (116-204)||(34147240-34147328)
chr6 (116-204)||(34159856-34159944)
[»] scaffold0620 (1 HSPs)
scaffold0620 (118-207)||(7088-7177)


Alignment Details
Target: chr6 (Bit Score: 128; Significance: 3e-66; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 114 - 245
Target Start/End: Original strand, 34115454 - 34115585
Alignment:
Q  114 gcgaagatgtcacatgttgatgttgttgctgaaattcgaagcggcatgaataatgcgaagtgtgcctatgatttaaagactgaggcaagtttttcttttt 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34115454 gcgaagatgtcacatgttgatgttgttgctgaaattcgaagcggcatgaataatgcgaagtgtgcctatgatttaaagactgaggcaagtttttcttttt 34115553  T
Q  214 ctgaaaatgttaacaaagtttatagttccgac 245  Q
    ||| ||||||||||||||||||||||||||||    
T  34115554 ctggaaatgttaacaaagtttatagttccgac 34115585  T

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Target: chr6; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 117 - 204
Target Start/End: Original strand, 34149756 - 34149843
Alignment:
Q  117 aagatgtcacatgttgatgttgttgctgaaattcgaagcggcatgaataatgcgaagtgtgcctatgatttaaagactgaggcaagtt 204  Q
    |||||||||||||||||||| ||||||||||||||||| ||||||||| |||| |||||||| |||||| |||| |||||||||||||    
T  34149756 aagatgtcacatgttgatgtcgttgctgaaattcgaagaggcatgaatgatgcaaagtgtgcgtatgatataaaaactgaggcaagtt 34149843  T

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Target: chr6; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 117 - 204
Target Start/End: Original strand, 34162372 - 34162459
Alignment:
Q  117 aagatgtcacatgttgatgttgttgctgaaattcgaagcggcatgaataatgcgaagtgtgcctatgatttaaagactgaggcaagtt 204  Q
    |||||||||||||||||||| ||||||||||||||||| ||||||||| |||| |||||||| |||||| |||| |||||||||||||    
T  34162372 aagatgtcacatgttgatgtcgttgctgaaattcgaagaggcatgaatgatgcaaagtgtgcgtatgatataaaaactgaggcaagtt 34162459  T

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Target: chr6; HSP #4
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 114 - 205
Target Start/End: Original strand, 34169583 - 34169674
Alignment:
Q  114 gcgaagatgtcacatgttgatgttgttgctgaaattcgaagcggcatgaataatgcgaagtgtgcctatgatttaaagactgaggcaagttt 205  Q
    |||||||||| |||||||| |||  |||||||||||| |||||||||||| |||| ||||||||| ||||||||||| ||||||||| ||||    
T  34169583 gcgaagatgttacatgttgctgtcattgctgaaattcaaagcggcatgaaaaatgtgaagtgtgcatatgatttaaaaactgaggcatgttt 34169674  T

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Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 118 - 207
Target Start/End: Original strand, 34091754 - 34091843
Alignment:
Q  118 agatgtcacatgttgatgttgttgctgaaattcgaagcggcatgaataatgcgaagtgtgcctatgatttaaagactgaggcaagttttt 207  Q
    ||||||| |||| |||||| || |||||||||  ||||||| |||| || ||||||||||| | |||| |||| ||||||||||||||||    
T  34091754 agatgtcgcatgatgatgtcgtagctgaaattaaaagcggcttgaaaaaggcgaagtgtgcgtttgatataaaaactgaggcaagttttt 34091843  T

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Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 118 - 207
Target Start/End: Original strand, 34106598 - 34106687
Alignment:
Q  118 agatgtcacatgttgatgttgttgctgaaattcgaagcggcatgaataatgcgaagtgtgcctatgatttaaagactgaggcaagttttt 207  Q
    |||||||||||| ||||||  | |||||||||  |||||||||||| || ||||||||||| | |||| |||| || |||| ||||||||    
T  34106598 agatgtcacatgatgatgtcctagctgaaattaaaagcggcatgaaaaaggcgaagtgtgcgtttgatataaaaaccgaggtaagttttt 34106687  T

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Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 114 - 190
Target Start/End: Original strand, 34109482 - 34109558
Alignment:
Q  114 gcgaagatgtcacatgttgatgttgttgctgaaattcgaagcggcatgaataatgcgaagtgtgcctatgatttaaa 190  Q
    ||||||||||| |||| ||||||  |||||||||||  |||||||||||| || ||||| ||||| | |||||||||    
T  34109482 gcgaagatgtcgcatgatgatgtccttgctgaaattaaaagcggcatgaaaaaggcgaactgtgcgtttgatttaaa 34109558  T

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Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 116 - 204
Target Start/End: Original strand, 34120079 - 34120167
Alignment:
Q  116 gaagatgtcacatgttgatgttgttgctgaaattcgaagcggcatgaataatgcgaagtgtgcctatgatttaaagactgaggcaagtt 204  Q
    ||||||||| |||| ||||||  ||  |||||||  |||||||||||| || |||||||| || ||||||||||| || ||||||||||    
T  34120079 gaagatgtcgcatgatgatgtcctttgtgaaattaaaagcggcatgaaaaaggcgaagtgcgcatatgatttaaaaaccgaggcaagtt 34120167  T

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Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 116 - 204
Target Start/End: Original strand, 34147240 - 34147328
Alignment:
Q  116 gaagatgtcacatgttgatgttgttgctgaaattcgaagcggcatgaataatgcgaagtgtgcctatgatttaaagactgaggcaagtt 204  Q
    ||||||||| |||| ||||||  ||  |||||||  |||||||||||| || |||||||| || ||||||||||| || ||||||||||    
T  34147240 gaagatgtcgcatgatgatgtcctttgtgaaattaaaagcggcatgaaaaaggcgaagtgcgcatatgatttaaaaaccgaggcaagtt 34147328  T

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Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 116 - 204
Target Start/End: Original strand, 34159856 - 34159944
Alignment:
Q  116 gaagatgtcacatgttgatgttgttgctgaaattcgaagcggcatgaataatgcgaagtgtgcctatgatttaaagactgaggcaagtt 204  Q
    ||||||||| |||| ||||||  ||  |||||||  |||||||||||| || |||||||| || ||||||||||| || ||||||||||    
T  34159856 gaagatgtcgcatgatgatgtcctttgtgaaattaaaagcggcatgaaaaaggcgaagtgcgcatatgatttaaaaaccgaggcaagtt 34159944  T

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Target: scaffold0620 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0620
Description:

Target: scaffold0620; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 118 - 207
Target Start/End: Original strand, 7088 - 7177
Alignment:
Q  118 agatgtcacatgttgatgttgttgctgaaattcgaagcggcatgaataatgcgaagtgtgcctatgatttaaagactgaggcaagttttt 207  Q
    ||||||| |||| |||||| || |||||||||  ||||||| |||| || ||||||||||| | |||| |||| ||||||||||||||||    
T  7088 agatgtcgcatgatgatgtcgtagctgaaattaaaagcggcttgaaaaaggcgaagtgtgcgtttgatataaaaactgaggcaagttttt 7177  T

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