View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12895_low_2 (Length: 533)
Name: NF12895_low_2
Description: NF12895
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12895_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 18 - 262
Target Start/End: Complemental strand, 39492904 - 39492660
Alignment:
| Q |
18 |
gatccaattggttttaattcctttgggagctttgccagcatagaaaacgagtgctttctttataccaagtgccttaggctttccaatcggcttatcagct |
117 |
Q |
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| T |
39492904 |
gatccaattggttttaattcctttgggagctttgccagcatagaaaacgagtgctttctttataccaagtgccttaggctttccaatcggcttatcagct |
39492805 |
T |
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| Q |
118 |
ccggtcgccttccaatatccggttcccgcagcccggttcggccgtgaaccgtttggatattttcgatcccttggagagaaaaaataccactctttctcac |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39492804 |
ccggtcgccttccaatatccggttcccgcagcccggttcggccgtgaaccgtttggatattttcgatcccttggagagaaaaaataccactctttctcac |
39492705 |
T |
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| Q |
218 |
cgtaaagagccatttctgtatataaaacaaaattagcattcaaat |
262 |
Q |
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| T |
39492704 |
cgtaaagagccatttctgtatacaaaacaaaattagcattgaaat |
39492660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 303 - 498
Target Start/End: Complemental strand, 39492637 - 39492442
Alignment:
| Q |
303 |
ccaccagacacgatgaaaaagtacctggaagatgccatggatcaaacttatacaaatcaatttctttgataataggaacagcaattggaagggaagcaca |
402 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39492637 |
ccactagacacgatgaaaaagtacctggaagatgccatggatcaaacttatacaaatcaatttctttgataataggaacagcaattggaagggaagcaca |
39492538 |
T |
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| Q |
403 |
ctttctacacaagtagtgattcacaagctcatcatcagtagggtgaaatctgaagccaggtggtaactctaatgctccttgcattcgcgtcgtata |
498 |
Q |
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| T |
39492537 |
ctttctacacaagtagtgattcacaagctcatcatcagtagggtgaaatctgaagccaggtggtaactctaatgctccttgcattcgcgtcgtata |
39492442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 72; Significance: 2e-32; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 321 - 488
Target Start/End: Complemental strand, 44370976 - 44370809
Alignment:
| Q |
321 |
aagtacctggaagatgccatggatcaaacttatacaaatcaatttctttgataataggaacagcaattggaagggaagcacactttctacacaagtagtg |
420 |
Q |
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||||||||||||| |||||||||||||||||||||||||||| |||||||| || ||||||| ||| | | |||||| || | |||||||||||| |
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| T |
44370976 |
aagtacctggaagctgccatggatcaaacttatacaaatcaacttctttgacaacgggaacagaaatagattgaccagcacatttgcgacacaagtagtg |
44370877 |
T |
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| Q |
421 |
attcacaagctcatcatcagtagggtgaaatctgaagccaggtggtaactctaatgctccttgcattc |
488 |
Q |
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| T |
44370876 |
attcaccaattcttcatcagtagggtgaaatctgaaaccaggtggtaattctaattcaccttgcattc |
44370809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 100 - 215
Target Start/End: Complemental strand, 44371196 - 44371081
Alignment:
| Q |
100 |
ccaatcggcttatcagctccggtcgccttccaatatccggttcccgcagcccggttcggccgtgaaccgtttggatattttcgatcccttggagagaaaa |
199 |
Q |
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||||| || ||||||||||| || || |||||||| || |||| ||||| || || |||| |||||||| ||||| |||| |||||||||||||||| |
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| T |
44371196 |
ccaattggtttatcagctccagtagctttccaataaccacttccagcagctcgatttggcctcgaaccgttcggatactttctgtcccttggagagaaaa |
44371097 |
T |
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| Q |
200 |
aataccactctttctc |
215 |
Q |
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||||||| |||||||| |
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| T |
44371096 |
aataccattctttctc |
44371081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 124 - 209
Target Start/End: Complemental strand, 39954405 - 39954320
Alignment:
| Q |
124 |
gccttccaatatccggttcccgcagcccggttcggccgtgaaccgtttggatattttcgatcccttggagagaaaaaataccactc |
209 |
Q |
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|||||||||||||| | || || ||||||||||||| |||||||||||| ||||||| || | ||| |||||||| |||||||| |
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| T |
39954405 |
gccttccaatatccagacccagccgcccggttcggccttgaaccgtttgggtattttctgtctcgtggcgagaaaaagtaccactc |
39954320 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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