View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12895_low_4 (Length: 412)
Name: NF12895_low_4
Description: NF12895
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12895_low_4 |
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| [»] scaffold0013 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 14 - 309
Target Start/End: Original strand, 45656526 - 45656822
Alignment:
| Q |
14 |
cacacatgcatcaaggaatcgtgcatcatgtgcaagaggacaagagatgatgatgggcttgttaggtggttcaagtatgaggaagggatttggaaacatg |
113 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45656526 |
cacacatgcatcaaggaatcgtgcatcatgtgtaagaggacaagagatgatgatgggcttgttaggtggttcaagtatgaggaagggatttggaaacatg |
45656625 |
T |
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| Q |
114 |
atgaagttagctctcttgcactttgagaaaacaaaatatcgtattatatatgcatgcaataagctattacatcttatgtaatatttgcactttg-nnnnn |
212 |
Q |
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| T |
45656626 |
atgaagttagctctcttgcactttgagaaaacaaaatatcgtattttatatgcatgcaataagctattacatcttatgtaatatttgcactttgttaatc |
45656725 |
T |
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| Q |
213 |
nnnngagatattgttttggccttataggcaaggaacaattttatcttatgtactgtatgttatttacctgagatattatgaacaaatatctttgttg |
309 |
Q |
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| T |
45656726 |
atttgagatattgttttggccttataggcaaggaacaattttattttatgtactgtatgttatttacctgagatgttatgaacaaatatctttgttg |
45656822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 340 - 406
Target Start/End: Original strand, 45656853 - 45656919
Alignment:
| Q |
340 |
agaattacttcatagatcttataatttaatttaaagtttggggttcaccatttattcttcttctctc |
406 |
Q |
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| T |
45656853 |
agaattacttcatagatcttataatttaatttaaagtttcgggttcactatttattcttcttctctc |
45656919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0013 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: scaffold0013
Description:
Target: scaffold0013; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 14 - 142
Target Start/End: Complemental strand, 38522 - 38394
Alignment:
| Q |
14 |
cacacatgcatcaaggaatcgtgcatcatgtgcaagaggacaagagatgatgatgggcttgttaggtggttcaagtatgaggaagggatttggaaacatg |
113 |
Q |
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||||||||||| || ||||| ||||||||||| | | ||||||| |||| ||||||| ||||||||| | |||||||||||||||||||||||||| |
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| T |
38522 |
cacacatgcatgaaagaatcatgcatcatgtgtcatcgaacaagagttgattgtgggcttcctaggtggtttaggtatgaggaagggatttggaaacatg |
38423 |
T |
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| Q |
114 |
atgaagttagctctcttgcactttgagaa |
142 |
Q |
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| T |
38422 |
atgaagttagctctcttgcactctgagaa |
38394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 15 - 137
Target Start/End: Complemental strand, 40947997 - 40947875
Alignment:
| Q |
15 |
acacatgcatcaaggaatcgtgcatcatgtgcaagaggacaagagatgatgatgggcttgttaggtggttcaagtatgaggaagggatttggaaacatga |
114 |
Q |
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|||||||||| | ||||| ||||||||||| ||||||||| || |||||||| ||| ||| ||||||| || ||||| |||||||||||| |||| |
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| T |
40947997 |
acacatgcatggaagaatcatgcatcatgtgtcagaggacaaaagcagatgatggacttcctagatggttcagatacgaggatgggatttggaaagatga |
40947898 |
T |
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| Q |
115 |
tgaagttagctctcttgcacttt |
137 |
Q |
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| T |
40947897 |
tgaaataagttctcttgcacttt |
40947875 |
T |
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