View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12895_low_5 (Length: 394)
Name: NF12895_low_5
Description: NF12895
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12895_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 8 - 61
Target Start/End: Original strand, 2156010 - 2156063
Alignment:
| Q |
8 |
gagaagcatagggagttaccacaataatgtcaacaagagaaggtgccacagctg |
61 |
Q |
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| T |
2156010 |
gagaatcataaggagttaccacaataatgtcaacaagagaaggtgccacagctg |
2156063 |
T |
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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 240 - 282
Target Start/End: Original strand, 2156243 - 2156285
Alignment:
| Q |
240 |
ctctcacaaaacccttttggcactaccaaagaacaaaaagagc |
282 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||| |
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| T |
2156243 |
ctcttacaaaacccttttggcactaccaaagaacaaaaagagc |
2156285 |
T |
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