View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12895_low_7 (Length: 322)
Name: NF12895_low_7
Description: NF12895
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12895_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 238; Significance: 1e-132; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 2 - 279
Target Start/End: Original strand, 394714 - 394990
Alignment:
| Q |
2 |
caaccgaagaggagaaatcaattgtaccaccgtatctgaaacgatccggttgaggatttcggtgaaggtggagctttcccggaaatccacgtgatacagt |
101 |
Q |
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| T |
394714 |
caaccaaagaggagaac-caattgtaccaccgtatctgaaacgatccggttgaggatttcggtgaaggtggagctttcccggaaatccacgtgatacagt |
394812 |
T |
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| Q |
102 |
atccgcttgatatggaaaggaatgagaattcgaagagattcttacggttacggttgatgttcatggtaatgttgcgtgtgatgctatgagaatgcgaaga |
201 |
Q |
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| T |
394813 |
atccacttgatatggaaaggaatgagaattcgaagagattcttacggttacggttgatgttcatggtaatgttgcgtatgatgctatgagaatgcgaaga |
394912 |
T |
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| Q |
202 |
aatttgtatatatccagcacaaggatttgataccaatgattttgaagaatgatgagacgatggaggaaacgaagattg |
279 |
Q |
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| T |
394913 |
aatttgtatatacccagcacaaggatttgataccaatgattttgaagaatgatgaaatggtggaggaaacgaagattg |
394990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 49 - 255
Target Start/End: Complemental strand, 11456021 - 11455792
Alignment:
| Q |
49 |
ggttgaggatttcggtgaaggtggagctttcccggaaatccacgtgatacagtatccgcttgatatggaaaggaatgagaattcgaag----------ag |
138 |
Q |
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| T |
11456021 |
ggttgaggattttggagaaggtggagctttcccggagatccatgtggcacagtatccgcttgatatgggaaggaataagaattcgaagccgggttcgaag |
11455922 |
T |
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| Q |
139 |
attcttacggttacggttgatgttcatggtaatgttgcgtgtgatgct-------------atgagaatgcgaagaaatttgtatatatccagcacaagg |
225 |
Q |
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| T |
11455921 |
attcttccggttacggttgatgctcatggtaatgttgcttatgatgctattgtgaagcagaatgagaatgctaagaagattgtttatacccagcataagg |
11455822 |
T |
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| Q |
226 |
atttgataccaatgattttgaagaatgatg |
255 |
Q |
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| T |
11455821 |
atttgataccgaagattttgaagaatgatg |
11455792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 272 - 307
Target Start/End: Original strand, 395001 - 395036
Alignment:
| Q |
272 |
gaagattgttaatgtgaggcttagtgcgtcaatgtt |
307 |
Q |
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| T |
395001 |
gaagattgttaatgtgaggcttagtgcgtcaatgtt |
395036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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