View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12895_low_8 (Length: 290)
Name: NF12895_low_8
Description: NF12895
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12895_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 252; Significance: 1e-140; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 18 - 277
Target Start/End: Original strand, 44640229 - 44640488
Alignment:
| Q |
18 |
catgcatttatgcacttcattttggagtcctatgatacctcttttttgcaaagcataccaaagaaagattggagcatgaccacttcgactaccactaatt |
117 |
Q |
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| T |
44640229 |
catgcatttatgcacttcattttggagtcctatgatacctcttttttgcaaagcataccaaagaaagattggagcatgaccacttcgactaccactaatt |
44640328 |
T |
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| Q |
118 |
gtggtatccctagaaccaatcacttcaacatctttacataaagtgttgatatgttctaaatgagttaataaaacaccacaaggaattggacatcccagaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
44640329 |
gtggtatccctagaaccaatcacttcaacatctttacataaagtgttgatatgttctaaacgagttaataaaacaccacaaggaattggacatcccagaa |
44640428 |
T |
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| Q |
218 |
acttatggccagagatagttatacttccgatgggcttcttgaaggtaatgcttggagcct |
277 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
44640429 |
acttatggccagagatagttatacttccaatgggcttcttgaaggtaatgcttggagcct |
44640488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 181; E-Value: 8e-98
Query Start/End: Original strand, 59 - 279
Target Start/End: Original strand, 44668583 - 44668803
Alignment:
| Q |
59 |
ttttttgcaaagcataccaaagaaagattggagcatgaccacttcgactaccactaattgtggtatccctagaaccaatcacttcaacatctttacataa |
158 |
Q |
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||||||||||||||||||||| |||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44668583 |
ttttttgcaaagcataccaaataaagattgaagcatgtccacttcgactaccactaattgtggtatccctagaaccaatcacttcaacatctttacataa |
44668682 |
T |
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| Q |
159 |
agtgttgatatgttctaaatgagttaataaaacaccacaaggaattggacatcccagaaacttatggccagagatagttatacttccgatgggcttcttg |
258 |
Q |
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| T |
44668683 |
agtgttgatatgttctaaacgagttaataaaacaccacaaggaattggacatcccaaaaacttatggcctgaaatggttatacttccaatggacttcttg |
44668782 |
T |
|
| Q |
259 |
aaggtaatgcttggagcctat |
279 |
Q |
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| T |
44668783 |
aaggtaatgcttggagcctat |
44668803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 22 - 279
Target Start/End: Original strand, 44660073 - 44660330
Alignment:
| Q |
22 |
catttatgcacttcattttggagtcctatgatacctcttttttgcaaagcataccaaagaaagattggagcatgaccacttcgactaccactaattgtgg |
121 |
Q |
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|||| |||||| ||||||| |||||||| | ||| ||||||| | |||||||||||| ||||| |||||||| |||| || ||||| | ||||||| |
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| T |
44660073 |
cattcatgcacctcattttcaagtcctattaaacccctttttttgagagcataccaaaggaagatgggagcatgcccacaacggctacctgtgattgtgg |
44660172 |
T |
|
| Q |
122 |
tatccctagaaccaatcacttcaacatctttacataaagtgttgatatgttctaaatgagttaataaaacaccacaaggaattggacatcccagaaactt |
221 |
Q |
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| T |
44660173 |
catcccttgaagcaatgatgtcaacatctctagatagtgcattcatgtatttcaaacgagttatcaaaacaccacaaggtgatgggcatcccaaaaactt |
44660272 |
T |
|
| Q |
222 |
atggccagagatagttatacttccgatgggcttcttgaaggtaatgcttggagcctat |
279 |
Q |
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| T |
44660273 |
atggcctgaaattgttacactgtcgatgggtttcttgaagctaatccttggagcctat |
44660330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 19 - 279
Target Start/End: Complemental strand, 29357740 - 29357480
Alignment:
| Q |
19 |
atgcatttatgcacttcattttggagtcctatgatacctcttttttgcaaagcataccaaagaaagattggagcatgaccacttcgactaccactaattg |
118 |
Q |
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||||||| ||| |||||||| | ||||||||| | ||| ||||||| | ||||||||||||||||||||||||||| ||||| || ||||| | |||| |
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| T |
29357740 |
atgcattcatgtacttcattctcgagtcctattaaacccctttttttgagagcataccaaagaaagattggagcatgcccactacggctacctgtgattg |
29357641 |
T |
|
| Q |
119 |
tggtatccctagaaccaatcacttcaacatctttacataaagtgttgatatgttctaaatgagttaataaaacaccacaaggaattggacatcccagaaa |
218 |
Q |
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| | |||||| ||| |||| |||||||||| || ||| | ||||||| || ||| |||||| |||||||||||||||| ||| ||||||| ||| |
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| T |
29357640 |
tagcatcccttgaagcaatatattcaacatctctagatagtgcattgatatatttcaaacgagttatcaaaacaccacaaggaaatgggcatcccaaaaa |
29357541 |
T |
|
| Q |
219 |
cttatggccagagatagttatacttccgatgggcttcttgaaggtaatgcttggagcctat |
279 |
Q |
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|||||| || || ||||||| ||| |||| || ||||||||| |||| ||| |||||||| |
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| T |
29357540 |
cttatgacctgaaatagttacactgtcgataggtttcttgaagctaatccttagagcctat |
29357480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 19 - 278
Target Start/End: Complemental strand, 29341713 - 29341454
Alignment:
| Q |
19 |
atgcatttatgcacttcattttggagtcctatgatacctcttttttgcaaagcataccaaagaaagattggagcatgaccacttcgactaccactaattg |
118 |
Q |
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||||||| ||| |||||||| | ||||||||| | ||| ||||||| | |||||||||||| |||||||||||||| ||||| || ||||| | || | |
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| T |
29341713 |
atgcattcatgtacttcattctcgagtcctattaaacccctttttttgagagcataccaaagtaagattggagcatgcccactacggctacctgtgatgg |
29341614 |
T |
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| Q |
119 |
tggtatccctagaaccaatcacttcaacatctttacataaagtgttgatatgttctaaatgagttaataaaacaccacaaggaattggacatcccagaaa |
218 |
Q |
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| | |||||| ||| |||| |||||||||| || ||| | ||||||| || ||| |||||| ||||||||||||||| ||| ||||||| ||| |
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| T |
29341613 |
tagcatcccttgaagcaatatattcaacatctctagatagtgcattgatatatttcaaacgagttatcaaaacaccacaaggagatgggcatcccaaaaa |
29341514 |
T |
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| Q |
219 |
cttatggccagagatagttatacttccgatgggcttcttgaaggtaatgcttggagccta |
278 |
Q |
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|||||| || || ||||||| ||| |||| || ||||||||| |||| ||| ||||||| |
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| T |
29341513 |
cttatgacctgaaatagttacactgtcgataggtttcttgaagctaatccttagagccta |
29341454 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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