View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12895_low_9 (Length: 270)

Name: NF12895_low_9
Description: NF12895
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12895_low_9
NF12895_low_9
[»] chr3 (8 HSPs)
chr3 (19-251)||(35695091-35695329)
chr3 (92-175)||(557578-557662)
chr3 (108-179)||(47720898-47720969)
chr3 (129-182)||(26373382-26373435)
chr3 (115-195)||(30498991-30499071)
chr3 (94-251)||(42433345-42433504)
chr3 (130-240)||(26482523-26482635)
chr3 (92-176)||(28541480-28541564)
[»] chr6 (3 HSPs)
chr6 (40-244)||(1717546-1717750)
chr6 (91-181)||(31750232-31750323)
chr6 (148-192)||(30625567-30625611)
[»] chr2 (8 HSPs)
chr2 (25-243)||(25221674-25221893)
chr2 (25-243)||(31055475-31055693)
chr2 (92-181)||(17303530-17303620)
chr2 (90-259)||(44742184-44742354)
chr2 (105-181)||(33050827-33050903)
chr2 (129-181)||(35658276-35658328)
chr2 (119-180)||(18481911-18481971)
chr2 (90-178)||(39711495-39711583)
[»] chr4 (9 HSPs)
chr4 (60-245)||(51267435-51267620)
chr4 (57-251)||(7784741-7784935)
chr4 (105-179)||(22065807-22065881)
chr4 (41-157)||(41322015-41322132)
chr4 (92-181)||(20626618-20626707)
chr4 (91-179)||(38011455-38011544)
chr4 (90-181)||(12328414-12328506)
chr4 (114-174)||(41421371-41421431)
chr4 (135-196)||(23096488-23096549)
[»] chr5 (6 HSPs)
chr5 (97-242)||(18012869-18013014)
chr5 (90-181)||(3925536-3925630)
chr5 (115-197)||(5215129-5215211)
chr5 (90-182)||(4157577-4157670)
chr5 (114-180)||(35078046-35078112)
chr5 (90-149)||(35193242-35193302)
[»] scaffold0042 (1 HSPs)
scaffold0042 (90-182)||(31132-31225)
[»] chr1 (7 HSPs)
chr1 (91-197)||(14635725-14635830)
chr1 (124-242)||(23025570-23025688)
chr1 (119-180)||(11871507-11871568)
chr1 (119-180)||(18628874-18628935)
chr1 (90-146)||(32365995-32366052)
chr1 (128-181)||(43031353-43031406)
chr1 (125-177)||(23043549-23043601)
[»] chr7 (2 HSPs)
chr7 (125-195)||(43574000-43574070)
chr7 (92-181)||(22575185-22575279)
[»] scaffold0445 (1 HSPs)
scaffold0445 (90-178)||(10393-10482)
[»] scaffold0174 (1 HSPs)
scaffold0174 (91-178)||(30744-30829)


Alignment Details
Target: chr3 (Bit Score: 167; Significance: 2e-89; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 19 - 251
Target Start/End: Original strand, 35695091 - 35695329
Alignment:
Q  19 tgctttaggtccgcctccacaccggtaccgt-----ccttttatccgttgcagtgcgtgtgattgttttcggagtgatgctcgaaagagctttataccta 113  Q
    ||||| |||||||||||||||||||||||||     |||||||||||| | ||| ||||||||||||||||||||||||||||||||||||||||||||     
T  35695091 tgcttcaggtccgcctccacaccggtaccgtaccgtccttttatccgtcgtagtccgtgtgattgttttcggagtgatgctcgaaagagctttatacctg 35695190  T
Q  114 ctgctttgtttagggggttgttggtacgtggatctt-gttaccgtgatgacggtcgatccattcgccaacctaaaacccttttttatcctactgatgttc 212  Q
    |||||||||||||||| ||| ||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  35695191 ctgctttgtttaggggattgctggtacgtggatcttagttgccgtgatgacggtcgatccattcgccaacctaaaacccctttttatcctactgatgttc 35695290  T
Q  213 acttgtcatcttttttgtaacctggtttcgagctcgtac 251  Q
    |||||||||||||||||||||| |||||| |||||||||    
T  35695291 acttgtcatcttttttgtaacccggtttctagctcgtac 35695329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 92 - 175
Target Start/End: Original strand, 557578 - 557662
Alignment:
Q  92 gctcgaaagagct-ttatacctactgctttgtttagggggttgttggtacgtggatcttgttaccgtgatgacggtcgatccatt 175  Q
    ||||||||||||| ||||||||  || |||||| |||||||||||||||||||||||||| ||||||| || |||||||||||||    
T  557578 gctcgaaagagctattatacctgatgttttgttcagggggttgttggtacgtggatcttgataccgtgttggcggtcgatccatt 557662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 108 - 179
Target Start/End: Original strand, 47720898 - 47720969
Alignment:
Q  108 tacctactgctttgtttagggggttgttggtacgtggatcttgttaccgtgatgacggtcgatccattcgcc 179  Q
    ||||| ||| |||||| |||||||||||||||||||||||||| |||| || || |||||||||||||||||    
T  47720898 tacctgctgttttgttcagggggttgttggtacgtggatcttgataccttgttggcggtcgatccattcgcc 47720969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 129 - 182
Target Start/End: Complemental strand, 26373435 - 26373382
Alignment:
Q  129 ggttgttggtacgtggatcttgttaccgtgatgacggtcgatccattcgccaac 182  Q
    ||||| |||||||||||||||| ||||||| |||||||||||||||||||||||    
T  26373435 ggttgctggtacgtggatcttgataccgtgttgacggtcgatccattcgccaac 26373382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 115 - 195
Target Start/End: Complemental strand, 30499071 - 30498991
Alignment:
Q  115 tgctttgtttagggggttgttggtacgtggatcttgttaccgtgatgacggtcgatccattcgccaacctaaaaccctttt 195  Q
    ||||||||| ||||||||| |||||| |||||||||  |||||| || |||||||||||||||||||  || |||||||||    
T  30499071 tgctttgttgagggggttgctggtacttggatcttgaaaccgtgttggcggtcgatccattcgccaatttataaccctttt 30498991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 94 - 251
Target Start/End: Complemental strand, 42433504 - 42433345
Alignment:
Q  94 tcgaaagagct-ttatacctactgctttgtttagggggttgttggtacgtggatcttgttaccgtgatgacggtcgatccattcgccaacctaaaaccct 192  Q
    ||||||||||| |||||||| |||||||||| ||||| ||| |||||||||||||| | ||||||| || |||| |||||||||| |||    ||||| |    
T  42433504 tcgaaagagctattatacctgctgctttgttcagggg-ttgctggtacgtggatctcgataccgtgttggcggtggatccattcgtcaattataaacctt 42433406  T
Q  193 ttttt-atcctactgatgttcacttgtcat-cttttttgtaacctggtttcgagctcgtac 251  Q
    ||||| || |||  ||||||||||  ||||  |||||||||| ||||||||| ||||||||    
T  42433405 tttttaattctatggatgttcactcttcatatttttttgtaatctggtttcgtgctcgtac 42433345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 130 - 240
Target Start/End: Original strand, 26482523 - 26482635
Alignment:
Q  130 gttgttggtacgtggatcttgttaccgtgatgacggtcgatccattcgccaacctaaaacccttttttatcc-tactgatgttcacttgtca-tcttttt 227  Q
    ||||||||||||||||||||| | || || || ||||||||||| ||| |||| || | |||||||||||||  || ||||||||||  ||| | |||||    
T  26482523 gttgttggtacgtggatcttgatgccatgttggcggtcgatccactcgtcaacttataccccttttttatccacacagatgttcactcttcattgttttt 26482622  T
Q  228 tgtaacctggttt 240  Q
    |||||| ||||||    
T  26482623 tgtaacatggttt 26482635  T

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Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 92 - 176
Target Start/End: Complemental strand, 28541564 - 28541480
Alignment:
Q  92 gctcgaaagagctt-tatacctactgctttgtttagggggttgttggtacgtggatcttgttaccgtgatgacggtcgatccattc 176  Q
    |||||||||||||  ||| ||| || ||||||| ||||||||| |||||| ||||| ||| ||||||| || ||||||||||||||    
T  28541564 gctcgaaagagctcctatgcctgctactttgttcagggggttgatggtacatggat-ttgataccgtgttggcggtcgatccattc 28541480  T

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Target: chr6 (Bit Score: 85; Significance: 1e-40; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 40 - 244
Target Start/End: Complemental strand, 1717750 - 1717546
Alignment:
Q  40 ccggtaccgtccttttatccgttgcagtgcgtgtgattgttttcggagtgatgctcgaaagagctttatacctactgctttgtttagggggttgttggta 139  Q
    ||||||| ||||| || || |||||||| | ||||||||||||||||||| |||||||||||||||||||||| |||||||||| ||||||||| |||      
T  1717750 ccggtacagtcctcttgtctgttgcagtccttgtgattgttttcggagtgttgctcgaaagagctttatacctgctgctttgttcagggggttgctggat 1717651  T
Q  140 cgtggatcttgttaccgtgatgacggtcgatccattcgccaacctaaaacccttttttatcctactgatgttcacttgtcatcttttttgtaacctggtt 239  Q
    ||||||| ||||||||||| || |||||||||||| ||||||  | ||||||  | ||||||||||||   ||  | ||||| ||||||||||| |||||    
T  1717650 cgtggattttgttaccgtgctggcggtcgatccatacgccaatattaaacccgctcttatcctactgacactctttcgtcatattttttgtaacttggtt 1717551  T
Q  240 tcgag 244  Q
    |||||    
T  1717550 tcgag 1717546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 91 - 181
Target Start/End: Original strand, 31750232 - 31750323
Alignment:
Q  91 tgctcgaaagagct-ttatacctactgctttgtttaggggg-ttgttggtacgtggatcttgttaccgtgatgacggtcgatccattcgccaa 181  Q
    |||||||||||||| |||||||| ||||||| || |||||| ||| |||||||||||| ||||||||||| || |||||||||||||||||||    
T  31750232 tgctcgaaagagctattatacctgctgctttattcaggggggttgctggtacgtggat-ttgttaccgtgttggcggtcgatccattcgccaa 31750323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 148 - 192
Target Start/End: Complemental strand, 30625611 - 30625567
Alignment:
Q  148 ttgttaccgtgatgacggtcgatccattcgccaacctaaaaccct 192  Q
    ||||||||||| || ||||||||||||||||||| || |||||||    
T  30625611 ttgttaccgtgttggcggtcgatccattcgccaaacttaaaccct 30625567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 84; Significance: 5e-40; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 25 - 243
Target Start/End: Original strand, 25221674 - 25221893
Alignment:
Q  25 aggtccgcctccacaccggtaccgtccttttatccgttgcagtgcgtgtgattgttttcggagtgatgctcgaaagagctttatacctactgctttgttt 124  Q
    |||||||||| |||   ||||||||| | || ||||||||||| | |||||||||| ||||| || |||||||||||||||||||||| ||| ||||||     
T  25221674 aggtccgccttcactatggtaccgtcttcttgtccgttgcagtccttgtgattgttctcggattgttgctcgaaagagctttatacctgctgatttgttc 25221773  T
Q  125 agggggttgttggtacgtggatcttgttaccgtgatgacggtcgatccattcgccaacct-aaaacccttttttatcctactgatgttcacttgtcatct 223  Q
    ||||||||| ||| |||||||||||| |||| || || |||||||||||| || ||| || |||||| |||| ||||||||||| | || || ||| |||    
T  25221774 agggggttgctggaacgtggatcttggtaccatgctggcggtcgatccatacgtcaatctaaaaaccattttgtatcctactgacgctctctcgtcgtct 25221873  T
Q  224 tttttgtaacctggtttcga 243  Q
    |||||||||| |||||||||    
T  25221874 tttttgtaacttggtttcga 25221893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 25 - 243
Target Start/End: Original strand, 31055475 - 31055693
Alignment:
Q  25 aggtccgcctccacaccggtaccgtccttttatccgttgcagtgcgtgtgattgttttcggagtgatgctcgaaagagctttatacctactgctttgttt 124  Q
    |||||| ||| ||| ||||||||||| | || ||| ||||||| | ||||| |||| |||||||| |||||||||||||||||||||| ||||||| ||     
T  31055475 aggtcctccttcactccggtaccgtcatcttgtcccttgcagtccttgtgagtgttctcggagtgttgctcgaaagagctttataccttctgcttttttc 31055574  T
Q  125 agggggttgttggtacgtggatcttgttaccgtgatgacggtcgatccattcgccaa-cctaaaacccttttttatcctactgatgttcacttgtcatct 223  Q
    ||||||||| |||  ||||||| ||||||||||| || |||||||||||| |||||| | ||||||||| |||||| ||||||    ||  |  ||||||    
T  31055575 agggggttgctggaccgtggat-ttgttaccgtgttggcggtcgatccatacgccaatcttaaaaccctcttttattctactggccctctttcatcatct 31055673  T
Q  224 tttttgtaacctggtttcga 243  Q
    |||||||||| |||||||||    
T  31055674 tttttgtaacttggtttcga 31055693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 92 - 181
Target Start/End: Original strand, 17303530 - 17303620
Alignment:
Q  92 gctcgaaagagct-ttatacctactgctttgtttagggggttgttggtacgtggatcttgttaccgtgatgacggtcgatccattcgccaa 181  Q
    ||||||||||||| |||||||| |||||||||| |||||||||||||||||||||||| | || |||| || |||| |||| |||||||||    
T  17303530 gctcgaaagagctattatacctgctgctttgttcagggggttgttggtacgtggatctcgatatcgtgttggcggtggatctattcgccaa 17303620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 90 - 259
Target Start/End: Original strand, 44742184 - 44742354
Alignment:
Q  90 atgctcgaaagagct-ttatacctactgctttgtttagggggttgttggtacgtggatcttgttaccgtgatgacggtcgatccattcgccaacctaaaa 188  Q
    ||||||||||||||| |||| | |  || |||||| ||| ||||| |||||||||||||||| ||| ||| || || | |||| ||| |||||| | ||     
T  44742184 atgctcgaaagagctattatgcatgttgttttgttcaggaggttgctggtacgtggatcttgatactgtgttggcgattgatctatttgccaactttaa- 44742282  T
Q  189 cccttttttatccta-ctgatgttcacttgtcatcttttttgtaacctggtttcgagctcgtacacaggttc 259  Q
    |||||||| |||  | | |||| |||||  ||||||||||||| ||||||||||| ||||||||||||||||    
T  44742283 ccctttttgatctgaacggatgctcactcttcatcttttttgttacctggtttcgtgctcgtacacaggttc 44742354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 105 - 181
Target Start/End: Complemental strand, 33050903 - 33050827
Alignment:
Q  105 ttatacctactgctttgtttagggggttgttggtacgtggatcttgttaccgtgatgacggtcgatccattcgccaa 181  Q
    |||||||| |||||||||| ||||| |   |||||||||||| | | ||||||| || |||||||||||||||||||    
T  33050903 ttatacctgctgctttgttcaggggatcactggtacgtggatttggataccgtgttggcggtcgatccattcgccaa 33050827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 129 - 181
Target Start/End: Original strand, 35658276 - 35658328
Alignment:
Q  129 ggttgttggtacgtggatcttgttaccgtgatgacggtcgatccattcgccaa 181  Q
    ||||| ||||||||||||| | |||||||| || |||||||||||||||||||    
T  35658276 ggttgctggtacgtggatcgttttaccgtgttggcggtcgatccattcgccaa 35658328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 119 - 180
Target Start/End: Complemental strand, 18481971 - 18481911
Alignment:
Q  119 ttgtttagggggttgttggtacgtggatcttgttaccgtgatgacggtcgatccattcgcca 180  Q
    |||||||||| |||||||| || ||||| | ||||||||| || ||||||||||||||||||    
T  18481971 ttgtttagggagttgttggcacttggat-tcgttaccgtgttggcggtcgatccattcgcca 18481911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 90 - 178
Target Start/End: Complemental strand, 39711583 - 39711495
Alignment:
Q  90 atgctcgaaagagctttatacctactgctttgtttagggggttgttggtacgtggatcttgttaccgtgatgacggtcgatccattcgc 178  Q
    ||||| ||||||| ||||| | | |||||||||| || | | |||||| || ||||| ||||||||||| || ||||| ||||||||||    
T  39711583 atgcttgaaagagttttatgcttgctgctttgttcagagagctgttggcacttggattttgttaccgtgttggcggtctatccattcgc 39711495  T

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Target: chr4 (Bit Score: 75; Significance: 1e-34; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 60 - 245
Target Start/End: Original strand, 51267435 - 51267620
Alignment:
Q  60 gttgcagtgcgtgtgattgttttcggagtgatgctcgaaagagctttatacctactgctttgtttagggggttgttggtacgtggatcttgttaccgtga 159  Q
    |||||||| | ||||| |||| || ||||| ||||||||| |||||||||||| |||||||||| ||||||||| ||| |||||||| ||||||| |||     
T  51267435 gttgcagtccttgtgactgttctcagagtgttgctcgaaaaagctttatacctgctgctttgttcagggggttgctggaacgtggat-ttgttactgtgt 51267533  T
Q  160 tgacggtcgatccattcgccaacct-aaaacccttttttatcctactgatgttcacttgtcatcttttttgtaacctggtttcgagc 245  Q
    || | |||||||||| | |||| || ||||||||||||||||||| ||| |  | |||||||||||||||||||| |||||||||||    
T  51267534 tggcagtcgatccatacaccaatctaaaaacccttttttatcctattgacgccctcttgtcatcttttttgtaacttggtttcgagc 51267620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 57 - 251
Target Start/End: Original strand, 7784741 - 7784935
Alignment:
Q  57 tccgttgcagtgcgtgtgattgttttcggagtgatgctcgaaagagctttatacctactgctttgtttagggggttgttggtacgtggatcttgttaccg 156  Q
    ||||||||||| | || ||||||| || ||||| ||||||||||||| |||||||| |||||||| | ||||| ||| ||| |||||||| |||||||||    
T  7784741 tccgttgcagtccttgggattgttctcagagtgttgctcgaaagagcgttatacctgctgctttgctcaggggattgctggaacgtggattttgttaccg 7784840  T
Q  157 tgatgacggtcgatccattcgccaacctaa-aacccttttttatcctactgatgttcacttgtcatcttttttgtaacctggtttcgagctcgtac 251  Q
    || || | ||| |||||| ||||||   || ||  ||||||||  |||| || |||| | |||||||||||||||||| |||||||||||||||||    
T  7784841 tgctggctgtcaatccatacgccaagaaaataaaacttttttagtctaccgacgttctc-tgtcatcttttttgtaacttggtttcgagctcgtac 7784935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 105 - 179
Target Start/End: Original strand, 22065807 - 22065881
Alignment:
Q  105 ttatacctactgctttgtttagggggttgttggtacgtggatcttgttaccgtgatgacggtcgatccattcgcc 179  Q
    |||||||| |||||||||| |||||||||||||||||||||||||| ||||||| || |||||||||||||||||    
T  22065807 ttatacctgctgctttgttaagggggttgttggtacgtggatcttgataccgtgttggcggtcgatccattcgcc 22065881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 41 - 157
Target Start/End: Original strand, 41322015 - 41322132
Alignment:
Q  41 cggtaccgtccttttatccgttgcagtgcgtgtga-ttgttttcggagtgatgctcgaaagagctttatacctactgctttgtttagggggttgttggta 139  Q
    |||||| ||||| |||||||||||||| | ||||| ||||||| |  ||| ||||||| |||||||||||||| |||||||||| ||||  ||| |||      
T  41322015 cggtactgtcctcttatccgttgcagttcttgtgacttgttttagaggtgttgctcgacagagctttatacctgctgctttgttcagggaattgctggac 41322114  T
Q  140 cgtggatcttgttaccgt 157  Q
     |||||||||||||||||    
T  41322115 tgtggatcttgttaccgt 41322132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 92 - 181
Target Start/End: Complemental strand, 20626707 - 20626618
Alignment:
Q  92 gctcgaaagagctttatacctactgctttgtttagggggttgttggtacgtggatcttgttaccgtgatgacggtcgatccattcgccaa 181  Q
    |||| |||||||| | ||||| || ||| ||| ||||||||| | |||||||||||||| ||||||| || |||| ||||||||||||||    
T  20626707 gctcaaaagagctatttacctgctacttggttcagggggttgctagtacgtggatcttgataccgtgttggcggttgatccattcgccaa 20626618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 91 - 179
Target Start/End: Complemental strand, 38011544 - 38011455
Alignment:
Q  91 tgctcgaaagagcttt-atacctactgctttgtttagggggttgttggtacgtggatcttgttaccgtgatgacggtcgatccattcgcc 179  Q
    |||||||||||||||| || | | |||||| ||| |||| | |||||| || ||||| ||||||||||| ||||||||||||||||||||    
T  38011544 tgctcgaaagagcttttatgcttgctgcttagttcagggagctgttggcacttggattttgttaccgtgttgacggtcgatccattcgcc 38011455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 90 - 181
Target Start/End: Original strand, 12328414 - 12328506
Alignment:
Q  90 atgctcgaaagagct-ttatacctactgctttgtttagggggttgttggtacgtggatcttgttaccgtgatgacggtcgatccattcgccaa 181  Q
    ||||||||||||||| |||| ||  |||  ||||| ||||||||| ||||| ||||||| || ||||||  ||||||||||||||||| ||||    
T  12328414 atgctcgaaagagctattatgccggctgtgttgttcagggggttgctggtatgtggatcgtgataccgtattgacggtcgatccattcaccaa 12328506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 114 - 174
Target Start/End: Complemental strand, 41421431 - 41421371
Alignment:
Q  114 ctgctttgtttagggggttgttggtacgtggatcttgttaccgtgatgacggtcgatccat 174  Q
    |||||||||| |||| | |||||| |||||||| ||||||||||| || ||||||||||||    
T  41421431 ctgctttgttcagggagctgttggcacgtggattttgttaccgtgttggcggtcgatccat 41421371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 135 - 196
Target Start/End: Complemental strand, 23096549 - 23096488
Alignment:
Q  135 tggtacgtggatcttgttaccgtgatgacggtcgatccattcgccaacctaaaacccttttt 196  Q
    |||||||||||| ||| ||||||| || |||||||||||||| ||||  |||||| ||||||    
T  23096549 tggtacgtggattttgataccgtgttggcggtcgatccattcaccaatttaaaactcttttt 23096488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 66; Significance: 3e-29; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 97 - 242
Target Start/End: Original strand, 18012869 - 18013014
Alignment:
Q  97 aaagagctttatacctactgctttgtttagggggttgttggtacgtggatcttgttaccgtgatgacggtcgatccattcgccaacctaaaacccttttt 196  Q
    |||||||||| | | | |||||||||| | |||||||||||||||||||||||| ||||||  || ||||| ||| |||||||||| ||||||||| |||    
T  18012869 aaagagctttgtgcatgctgctttgttcaaggggttgttggtacgtggatcttgataccgtattggcggtcaatcaattcgccaacttaaaaccctcttt 18012968  T
Q  197 tatcctactgatgttcacttgtcatcttttttgtaacctggtttcg 242  Q
    |||||||| || | |||||  |||||||||| ||||||||||||||    
T  18012969 tatcctacagacgatcactcttcatctttttcgtaacctggtttcg 18013014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 90 - 181
Target Start/End: Original strand, 3925536 - 3925630
Alignment:
Q  90 atgctcgaaagagct----ttatacctactgctttgtttagggggttgttggtacgtggatcttgttaccgtgatgacggtcgatccattcgccaa 181  Q
    |||||||||||||||    |||||||| |||||||||| ||||||||| |||||||||||| ||||||||||| ||  ||||||||||||||||||    
T  3925536 atgctcgaaagagctattattatacctgctgctttgttcagggggttgctggtacgtggat-ttgttaccgtgttggtggtcgatccattcgccaa 3925630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 115 - 197
Target Start/End: Original strand, 5215129 - 5215211
Alignment:
Q  115 tgctttgtttagggggttgttggtacgtggatcttgttaccgtgatgacggtcgatccattcgccaacctaaaaccctttttt 197  Q
    ||||||||| | ||||||||||||||||||||||||  || ||| ||||||||||||||||  ||||  || |||||||||||    
T  5215129 tgctttgttcaaggggttgttggtacgtggatcttgaaactgtgttgacggtcgatccatttaccaaattataaccctttttt 5215211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 90 - 182
Target Start/End: Original strand, 4157577 - 4157670
Alignment:
Q  90 atgctcgaaagagct-ttatacctactgctttgtttagggggttgttggtacgtggatcttgttaccgtgatgacggtcgatccattcgccaac 182  Q
    ||||| ||||||||| || | ||||||  |||||| ||| || || |||| ||||||||||| ||||||| |||||||| ||||||||||||||    
T  4157577 atgctggaaagagctattttgcctactattttgttcaggaggctgctggtgcgtggatcttgataccgtgttgacggtcaatccattcgccaac 4157670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 180
Target Start/End: Complemental strand, 35078112 - 35078046
Alignment:
Q  114 ctgctttgtttagggggttgttggtacgtggatcttgttaccgtgatgacggtcgatccattcgcca 180  Q
    ||||||| || | ||||||  ||||||||||||||||  |||||| || ||||||||||||||||||    
T  35078112 ctgctttcttcatggggtttctggtacgtggatcttgaaaccgtgttggcggtcgatccattcgcca 35078046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 90 - 149
Target Start/End: Original strand, 35193242 - 35193302
Alignment:
Q  90 atgctcgaaagagct-ttatacctactgctttgtttagggggttgttggtacgtggatctt 149  Q
    ||||||||||||||| |||| |||| || |||||| ||| ||||||||||||| |||||||    
T  35193242 atgctcgaaagagctattatgcctattggtttgttcaggaggttgttggtacgcggatctt 35193302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0042 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0042
Description:

Target: scaffold0042; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 90 - 182
Target Start/End: Original strand, 31132 - 31225
Alignment:
Q  90 atgctcgaaagagct-ttatacctactgctttgtttagggggttgttggtacgtggatcttgttaccgtgatgacggtcgatccattcgccaac 182  Q
    ||||||||||||||| || | |||  || |||||| ||| ||||| |||||||||||||||| ||||||| |||||||||||||||||||||||    
T  31132 atgctcgaaagagctattttgcctggtgttttgttcaggaggttgctggtacgtggatcttgataccgtgttgacggtcgatccattcgccaac 31225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 91 - 197
Target Start/End: Complemental strand, 14635830 - 14635725
Alignment:
Q  91 tgctcgaaagagctt-tatacctactgctttgtttagggggttgttggtacgtggatcttgttaccgtgatgacggtcgatccattcgccaacctaaaac 189  Q
    ||||||||||||||  ||| ||| |||||||||| |||||| | | ||||||||||| ||||||||||| |||||||||||||||||||| || | ||||    
T  14635830 tgctcgaaagagctcctatgcctgctgctttgttcaggggggtct-ggtacgtggat-ttgttaccgtgttgacggtcgatccattcgcctactttaaac 14635733  T
Q  190 cctttttt 197  Q
    ||||||||    
T  14635732 cctttttt 14635725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 124 - 242
Target Start/End: Original strand, 23025570 - 23025688
Alignment:
Q  124 tagggggttgttggtacgtggatcttgttaccgtgatgacggtcgatccattcgccaacctaaaacccttttttatcctactgatgttcacttgtcatct 223  Q
    |||||||||| ||||||||||||| |  ||||||  || |||||||||||||| ||       |||||||||||||| ||| ||  ||||||| ||||||    
T  23025570 tagggggttgatggtacgtggatcgtaataccgtattggcggtcgatccattcaccttttatgaacccttttttatcttacggactttcacttttcatct 23025669  T
Q  224 tttttgtaacctggtttcg 242  Q
    |||||||||| ||||||||    
T  23025670 tttttgtaacttggtttcg 23025688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 119 - 180
Target Start/End: Original strand, 11871507 - 11871568
Alignment:
Q  119 ttgtttagggggttgttggtacgtggatcttgttaccgtgatgacggtcgatccattcgcca 180  Q
    ||||| |||| |||||||| || ||||| ||||||||||| |  ||||||||||||||||||    
T  11871507 ttgttcagggagttgttggcacttggattttgttaccgtgttagcggtcgatccattcgcca 11871568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 119 - 180
Target Start/End: Complemental strand, 18628935 - 18628874
Alignment:
Q  119 ttgtttagggggttgttggtacgtggatcttgttaccgtgatgacggtcgatccattcgcca 180  Q
    ||||| |||| | |||||| || ||||| ||||||||||| || ||||||||||||||||||    
T  18628935 ttgttcagggagctgttggcacttggattttgttaccgtgttggcggtcgatccattcgcca 18628874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 90 - 146
Target Start/End: Original strand, 32365995 - 32366052
Alignment:
Q  90 atgctcgaaagagcttt-atacctactgctttgtttagggggttgttggtacgtggat 146  Q
    ||||||||||||||||| || ||| |||| ||||||  ||||||||||||||||||||    
T  32365995 atgctcgaaagagcttttatgcctgctgcattgtttgaggggttgttggtacgtggat 32366052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 128 - 181
Target Start/End: Complemental strand, 43031406 - 43031353
Alignment:
Q  128 gggttgttggtacgtggatcttgttaccgtgatgacggtcgatccattcgccaa 181  Q
    |||||| |||||||||||||| ||||||||| || |||| ||||||||| ||||    
T  43031406 gggttgctggtacgtggatctggttaccgtgttggcggtagatccattcaccaa 43031353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 125 - 177
Target Start/End: Original strand, 23043549 - 23043601
Alignment:
Q  125 agggggttgttggtacgtggatcttgttaccgtgatgacggtcgatccattcg 177  Q
    ||||||||| |||||||||||| ||| ||||||| ||  ||||||||||||||    
T  23043549 agggggttgctggtacgtggatattgataccgtgttggtggtcgatccattcg 23043601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 125 - 195
Target Start/End: Complemental strand, 43574070 - 43574000
Alignment:
Q  125 agggggttgttggtacgtggatcttgttaccgtgatgacggtcgatccattcgccaacctaaaaccctttt 195  Q
    ||||||||| |||||||||||||||| ||||||| || |||||  ||||||||||||  ||||||||||||    
T  43574070 agggggttgctggtacgtggatcttgataccgtgttggcggtcagtccattcgccaatttaaaaccctttt 43574000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 92 - 181
Target Start/End: Complemental strand, 22575279 - 22575185
Alignment:
Q  92 gctcgaaagagc-tttatacctactgctttgtttagggggttgttggtacgtggatcttgtt---accgtgatgac-ggtcgatccattcgccaa 181  Q
    |||||||||||| ||||  ||| |||||||||| ||||||||| ||||||||||||||| ||   |||||| || | ||||||||||||||||||    
T  22575279 gctcgaaagagcatttacgcctgctgctttgttcagggggttgctggtacgtggatcttcttgataccgtgttggctggtcgatccattcgccaa 22575185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0445 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0445
Description:

Target: scaffold0445; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 90 - 178
Target Start/End: Original strand, 10393 - 10482
Alignment:
Q  90 atgctcgaaagagctt-tatacctactgctttgtttagggggttgttggtacgtggatcttgttaccgtgatgacggtcgatccattcgc 178  Q
    |||||| ||||||||| ||| ||| |||||||||| ||||||||| ||||||||||||||||  || ||| || |||| |||||||||||    
T  10393 atgctcaaaagagcttctatgcctgctgctttgttcagggggttgctggtacgtggatcttgaaactgtgttggcggtggatccattcgc 10482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0174 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0174
Description:

Target: scaffold0174; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 91 - 178
Target Start/End: Original strand, 30744 - 30829
Alignment:
Q  91 tgctcgaaagagctttatacctactgctttgtttagggggttgttggtacgtggatcttgttaccgtgatgacggtcgatccattcgc 178  Q
    |||||||||||||||||| | | |||||| ||  |||| |||||||| || ||||| ||||||||||| |||||||| ||||||||||    
T  30744 tgctcgaaagagctttatgcttgctgctt-gtgcagggagttgttggcacttggat-ttgttaccgtgttgacggtcaatccattcgc 30829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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