View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12896_high_1 (Length: 503)
Name: NF12896_high_1
Description: NF12896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12896_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 378; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 17 - 500
Target Start/End: Original strand, 25115330 - 25115815
Alignment:
| Q |
17 |
atttccaaattgggttttcacattcaatgtcttaaccttatacccttttgttttttccctatatttctgattgattttcccaattgggctatgcataagt |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
25115330 |
atttccaaattgggttttcacattcaatgtcttaaccttatacccttttgttttttccctttatttctgattgattttcccaattgggctatgcataagt |
25115429 |
T |
|
| Q |
117 |
tgaacctacagaaaaaagttttcatttttatcttcaagaagaagaagaataattaattctgagaagtgcnnnnnnnnnnnnnn---agtatataagaagc |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
25115430 |
tgaacctacagaaaaaagttttcatttttatcttcaagaagaagaagaataattaattctgagaagtgctttttgtttttttttttagtatataagaagc |
25115529 |
T |
|
| Q |
214 |
aaaataatttcattgagtttatagatcttgcacaagttggtttctagggttatcttattggaccaataaggtaatagtcttgaatatcaatatcaatttg |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25115530 |
aaaataatttcattgagtttatagatcttgcacaagttggtttctagggttatcttattggaccaataaggtaatagtcttgaatatcaatatcaatttg |
25115629 |
T |
|
| Q |
314 |
gtgcattttctttgaattatttttgataaagttgagtctattctagattcttaataagagtgtgtctcttttcatacacaaaaataaaataaaaagaaga |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
25115630 |
gtgcattttctttgaattatttttgataaagttgagtctattctagattcttaataagagtgtgtctcttttcatacacaaaaataaa--aaaaagaaga |
25115727 |
T |
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| Q |
414 |
aattctgattccttttg-nnnnnnnnntgcttattgattttaatttatctttcatattgttgtggtaaattctccacctttgcttctc |
500 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
25115728 |
aattctgattccttttgaaaaaaaaaatgcttattgattttaatttatctttcatattgttgtggtaaattctccacctttggttctc |
25115815 |
T |
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