View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12896_high_11 (Length: 221)
Name: NF12896_high_11
Description: NF12896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12896_high_11 |
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Alignment Details
Target: chr2 (Bit Score: 191; Significance: 1e-104; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 14 - 208
Target Start/End: Complemental strand, 39297024 - 39296830
Alignment:
| Q |
14 |
cagagacaacagtatcatgaacaataattttgtccttgggatatttctctaccatttcctttatctcatttccaaagttcagttcaatatctttagccac |
113 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39297024 |
cagaaacaacagtatcatgaacaataattttgtccttgggatatttctctaccatttcctttatctcatttccaaagttcagttcaatatctttagccac |
39296925 |
T |
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| Q |
114 |
ccaaatcaaatacacatcagccttacttttctgcaagagatatgataggaacacacaaattccagaacctgttgctactaaaagcactttttgat |
208 |
Q |
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| T |
39296924 |
ccaaatcaaatacacatcagccttacttttctgcaagagatatgataggaacacacaaattccagaacctgttgctactaaaagcactttttgat |
39296830 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 14 - 208
Target Start/End: Complemental strand, 39290144 - 39289950
Alignment:
| Q |
14 |
cagagacaacagtatcatgaacaataattttgtccttgggatatttctctaccatttcctttatctcatttccaaagttcagttcaatatctttagccac |
113 |
Q |
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|||| ||| |||||||||||||||| |||||||||| || ||||||||| |||| |||||||||||| ||||||||||||| |||||||||||||||||| |
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| T |
39290144 |
cagaaacagcagtatcatgaacaatgattttgtcctcggaatatttctccaccaattcctttatctcttttccaaagttcatttcaatatctttagccac |
39290045 |
T |
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| Q |
114 |
ccaaatcaaatacacatcagccttacttttctgcaagagatatgataggaacacacaaattccagaacctgttgctactaaaagcactttttgat |
208 |
Q |
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||||||||| |||||||||||||| |||||||||| ||| |||||| |||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
39290044 |
ccaaatcaagcacacatcagccttatttttctgcaacagaaatgataagaacacacaaatcccagaacctgttgctactaaaagcactttttgat |
39289950 |
T |
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