View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12896_high_4 (Length: 327)
Name: NF12896_high_4
Description: NF12896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12896_high_4 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 11 - 203
Target Start/End: Complemental strand, 46401260 - 46401068
Alignment:
| Q |
11 |
cacagactttctctgcaaaacagaggacaaataaattattaaattaaataaaactagatgtacttaagctttattaacagagcacaaaattgaatccata |
110 |
Q |
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| T |
46401260 |
cacagactttctctgcaaaacagaggacaaataaattattaaattaaataaaactagatgtacttaagctttattaacagagcacaaaattgaatccata |
46401161 |
T |
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| Q |
111 |
attcaaaaaactagaagcaaaataacaacgtactttgagcagtgcatcacttccagtaatgtaaccagaattctgcatcggaagtgagaattc |
203 |
Q |
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| T |
46401160 |
attcaaaaaactagaagcaaaataacaacgtactttgagcagtgcatcacttccagtaatgtaaccagaattctgcatcggaagtgagaattc |
46401068 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 248 - 327
Target Start/End: Complemental strand, 46401023 - 46400944
Alignment:
| Q |
248 |
cttagatttcagatgttatattcagtaatcactaaccacgagcttctcagcagcttcacagatcttatcaaccttcgcct |
327 |
Q |
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| T |
46401023 |
cttagatttcagatgttatattcagtaatcactaaccacgagcttctcagcagcttcacagatcttatcaaccttcgcct |
46400944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 280 - 327
Target Start/End: Complemental strand, 18554915 - 18554868
Alignment:
| Q |
280 |
taaccacgagcttctcagcagcttcacagatcttatcaaccttcgcct |
327 |
Q |
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| T |
18554915 |
taaccacaagcttctcagcagcttcacagattttatcaaccttcgcct |
18554868 |
T |
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