View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12896_high_9 (Length: 254)
Name: NF12896_high_9
Description: NF12896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12896_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 48250172 - 48249922
Alignment:
| Q |
1 |
ccgaaaccggcgaaggaaagcggtggtggttcgtcgaagaggaaaccatttaggactttgtttcataaagag---------ggaaatggtggtgggtctg |
91 |
Q |
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| T |
48250172 |
ccgaaaccggcgaaggaaagcggtggtggttcgtcgaagaggaaaccatttaggactttgtttcataaagagcataaagagggaaatggtggtgggtctg |
48250073 |
T |
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| Q |
92 |
aggtagaacaaagaggagggaaatcagtgaaaaaacaatgggggtttgatggattgaagaaatggaagagaaatgaattggatgatgatgagactgctcc |
191 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48250072 |
aggtagaacaaagaggagggaaatcagtgaaaaaacaatgggggtttgatggattgaagaaatggaagagaaatgaattggatgatgatgagactgctcc |
48249973 |
T |
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| Q |
192 |
tttgcctctgaatcagagatctgatagtgaggctttctcagcttcatctca |
242 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48249972 |
tttgcctctgaatcagagatctgatagtgaggctttctcagcttcatctca |
48249922 |
T |
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