View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12896_low_12 (Length: 211)
Name: NF12896_low_12
Description: NF12896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12896_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 184; Significance: 1e-100; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 184; E-Value: 1e-100
Query Start/End: Original strand, 6 - 205
Target Start/End: Original strand, 39295621 - 39295820
Alignment:
| Q |
6 |
agatcaatcctaacaaaagcagcccttttgcaattgaatcaacaacaaagacagagaaagcaggaacatggatttggagtcctccatggacaagaaacaa |
105 |
Q |
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| T |
39295621 |
agatcaatcctaacaaaagcagcccttttgcaattgaatcaacaacaaagacagagaaagcaggaacatggctttggattcctccatggacaagaaacaa |
39295720 |
T |
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| Q |
106 |
ttatcaagctattagctcaactaggactcaaagtcgagctagtagtcacttctgtgacatcaacattgatgctgacgatgatgagtatgaatttctagct |
205 |
Q |
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| T |
39295721 |
ttctcaagctattagttcaactaggactcaaagtcgagctagtagtcacttctgtgacatcaacattgatgctgacgatgatgagtatgaatttctagct |
39295820 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 6 - 107
Target Start/End: Original strand, 39288726 - 39288824
Alignment:
| Q |
6 |
agatcaatcctaacaaaagcagcccttttgcaattgaatcaacaacaaagacagagaaagcaggaacatggatttggagtcctccatggacaagaaacaa |
105 |
Q |
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| T |
39288726 |
agatcaatcctaacagaagaagcccttttgcaattgaatcaccaacaaagccagagagaactggaacatggctttggattcctc---ggacaagaaacaa |
39288822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 137 - 208
Target Start/End: Original strand, 39288869 - 39288940
Alignment:
| Q |
137 |
agtcgagctagtagtcacttctgtgacatcaacattgatgctgacgatgatgagtatgaatttctagctgaa |
208 |
Q |
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| T |
39288869 |
agtcgagcaagtagtcatttttgtgacatcaacattgatgctgatgatgttgagtatgaatttctagctgaa |
39288940 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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