View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12896_low_2 (Length: 380)
Name: NF12896_low_2
Description: NF12896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12896_low_2 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 351; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 18 - 380
Target Start/End: Complemental strand, 48250485 - 48250123
Alignment:
| Q |
18 |
aagattagcagtacaaggagctaagattgatgctagagacgtgattgcggggaaatcgaaagatttgaaagagaattctgaagaggagtggtctgtgatt |
117 |
Q |
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| T |
48250485 |
aagattagcagtacaaggagctaagattgatgctagagacgtgattgcggggaaatcgaaagatttgaaagagaattctgaagaggagtggtctgtgatt |
48250386 |
T |
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| Q |
118 |
gacttgaaagatgataagagtttgatgaacaaggagaatttgaattctaagggaaaatcaagtcatggatcagctttgaaacagattaaaggagcagctt |
217 |
Q |
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| T |
48250385 |
gacttgaaagatgataagagtttgatgaacaaggagaatttgaattctaagggaaaatcaagtcatggatcagctttgaaacagattaaaggagcagctt |
48250286 |
T |
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| Q |
218 |
cggttttcgggtttgtatcttcaaacaaacatgaaaagagtatatttgattcacctcctttgcataaacaacaaagtgatgggaaaactattcttatgga |
317 |
Q |
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| T |
48250285 |
cggtttttgggtttgtatcttcaaacaaacatgaaaagagtatatttgattcacctcctttgcataaacaacaaagtgatgggaaaactattcttatgga |
48250186 |
T |
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| Q |
318 |
ggaaagtgagcctccgaaaccggcgaaggaaagcggcggtggttcgtcgaaggggaaaccatt |
380 |
Q |
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| T |
48250185 |
ggaaagtgagcctccgaaaccggcgaaggaaagcggtggtggttcgtcgaagaggaaaccatt |
48250123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 196; Significance: 1e-106; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 45 - 304
Target Start/End: Complemental strand, 4632196 - 4631937
Alignment:
| Q |
45 |
tgatgctagagacgtgattgcggggaaatcgaaagatttgaaagagaattctgaagaggagtggtctgtgattgacttgaaagatgataagagtttgatg |
144 |
Q |
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| T |
4632196 |
tgatgctagagacgtgatcgccgggaaatcgaaagatttaaaagagaattctgaagagaaatggtatgtgattgatttgaaagatgataagagtttgatg |
4632097 |
T |
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| Q |
145 |
aacaaggagaatttgaattctaagggaaaatcaagtcatggatcagctttgaaacagattaaaggagcagcttcggttttcgggtttgtatcttcaaaca |
244 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| | ||||||| ||||| |||| |
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| T |
4632096 |
aacaaggagaatttgaattctaagggaaaatcaagtcatggatcagctttgaaacatattaatggagcagcttcggtttccaggtttgtttcttctaaca |
4631997 |
T |
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| Q |
245 |
aacatgaaaagagtatatttgattcacctcctttgcataaacaacaaagtgatgggaaaa |
304 |
Q |
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| T |
4631996 |
agcatgaaaagagcatatttgattcacctcctttgcataaacaacaaagtgaagggaaaa |
4631937 |
T |
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