View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12896_low_5 (Length: 317)
Name: NF12896_low_5
Description: NF12896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12896_low_5 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 284; Significance: 1e-159; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 18 - 317
Target Start/End: Complemental strand, 3093481 - 3093182
Alignment:
| Q |
18 |
gtttcgaaagtatcacattagattagatgtaacatgtctttaaaaagtaagtcataggtcaaagacatatcacactagtttgtaagaattgatttaaatc |
117 |
Q |
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| T |
3093481 |
gttttgaaagtctcacattagattagatgtaacatgtctttaaaaagtaagtcataggtcaaagacatatcgcactagtttgtaagaattgatttagatc |
3093382 |
T |
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| Q |
118 |
gaacacaaattttaaaatgtacctcgggagaaaacattccgaagtctctttgagaaccggtgaatgttgcgccgctagcggcttcaatatagctgccaaa |
217 |
Q |
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| T |
3093381 |
gaacacaaattttaaaatgtacctcgggagaaaacattccgaagtctctttgagaaccggtgaatgttgcgccgctagcggcttcaatatagctgccaaa |
3093282 |
T |
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| Q |
218 |
gctggtaatgccaacaacagaaatgagggaaacctctaccggagaaggagatgggacataaacagagttcattgggttatctgacattccttgtcctaca |
317 |
Q |
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| T |
3093281 |
gctggtaatgccaacaacagaaatgagggaaacctctaccggagaaggagatgggacataaacagagttcattgggttatctgacattccttgtcctaca |
3093182 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 44 - 316
Target Start/End: Complemental strand, 3084574 - 3084303
Alignment:
| Q |
44 |
atgtaacatgtctttaaaaagtaagtcataggtcaaagacatatcacactagtttgtaagaattgatttaaatcgaacacaaattttaaaatgtacctcg |
143 |
Q |
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| T |
3084574 |
atgtaccatgtcttgaaaaagtat-taataagtcgaagacatatcgcactagtttgtaagaattgatttagatggaacacaaattgttaaatgtaccttg |
3084476 |
T |
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| Q |
144 |
ggagaaaacattccgaagtctctttgagaaccggtgaatgttgcgccgctagcggcttcaatatagctgccaaagctggtaatgccaacaacagaaatga |
243 |
Q |
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| T |
3084475 |
ggagtaaacattgtgaactcgcttccattactggtgaaggctgcaccgctcacggcttcaatgtagctgccgaagttggtaatgccaacaactgaaatga |
3084376 |
T |
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| Q |
244 |
gggaaacctctaccggagaaggagatgggacataaacagagttcattgggttatctgacattccttgtcctac |
316 |
Q |
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|||| |||||||| || |||||||| ||||||||||||| ||||||||| ||||||||||||||||||||||| |
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| T |
3084375 |
gggagacctctacgggggaaggagacgggacataaacagcgttcattggattatctgacattccttgtcctac |
3084303 |
T |
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