View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12896_low_6 (Length: 285)

Name: NF12896_low_6
Description: NF12896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12896_low_6
NF12896_low_6
[»] chr7 (2 HSPs)
chr7 (18-275)||(24234920-24235177)
chr7 (25-116)||(24823427-24823519)
[»] chr8 (2 HSPs)
chr8 (207-278)||(10647357-10647428)
chr8 (208-271)||(14625879-14625942)
[»] chr5 (1 HSPs)
chr5 (208-271)||(27248057-27248120)
[»] chr4 (1 HSPs)
chr4 (38-124)||(12879949-12880036)
[»] chr2 (2 HSPs)
chr2 (207-278)||(28438822-28438893)
chr2 (208-270)||(7706936-7706998)
[»] chr6 (1 HSPs)
chr6 (207-267)||(11005066-11005126)
[»] chr3 (1 HSPs)
chr3 (29-96)||(32197577-32197645)


Alignment Details
Target: chr7 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 18 - 275
Target Start/End: Complemental strand, 24235177 - 24234920
Alignment:
Q  18 attcaagtggttagtttgatgggatctaacgtcctctagatgtcttgttgcttctcaatcacccaaaatgtcatacatgtaatacggggtaaagggtcgt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24235177 attcaagtggttagtttgatgggatctaacgtcctctagatgtcttgttgcttctcaatcacccaaaatgtcatacatgtaatacggggtaaagggtcgt 24235078  T
Q  118 cactcctttggagtctcattcacgatcgggtagttattaagatagggaatcacactcttgcaagtaattgaaacaaaaagtagacaaggtattcctaaat 217  Q
    ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| |||||||||||||||||||||||||| ||||||||||| ||    
T  24235077 cactcctttggagtctcattcacgatcggatagttattaaggtagggaatcacactctcgcaagtaattgaaacaaaaagtagactaggtattcctacat 24234978  T
Q  218 tgccatataaagaaaccacttttatacatgaatcttaaaatttcaccacatacctttg 275  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  24234977 tgccatataaagaaaccacttttatatatgaatcttaaaatttcaccacatacctttg 24234920  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 116
Target Start/End: Original strand, 24823427 - 24823519
Alignment:
Q  25 tggttagtttgatgggatctaacgt-cctctagatgtcttgttgcttctcaatcacccaaaatgtcatacatgtaatacggggtaaagggtcg 116  Q
    ||||||||||| ||||||||||||| ||||  ||| || || |||| || |||||||  ||| |||||||||| ||||||||||  |||||||    
T  24823427 tggttagtttggtgggatctaacgtccctccggatatcatggtgctccttaatcaccttaaaggtcatacatgcaatacggggtgtagggtcg 24823519  T

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Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 207 - 278
Target Start/End: Original strand, 10647357 - 10647428
Alignment:
Q  207 tattcctaaattgccatataaagaaaccacttttatacatgaatcttaaaatttcaccacatacctttgctt 278  Q
    ||||||||||||| ||| ||||||||||||||||| | ||||||||| ||||||||||||||||| ||||||    
T  10647357 tattcctaaattgtcatctaaagaaaccacttttacatatgaatcttcaaatttcaccacatacccttgctt 10647428  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 208 - 271
Target Start/End: Original strand, 14625879 - 14625942
Alignment:
Q  208 attcctaaattgccatataaagaaaccacttttatacatgaatcttaaaatttcaccacatacc 271  Q
    |||||||||||| ||| ||  | ||||||||||| | |||||||||| ||||||||||||||||    
T  14625879 attcctaaattgtcatctatcggaaccacttttaaatatgaatcttagaatttcaccacatacc 14625942  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 208 - 271
Target Start/End: Complemental strand, 27248120 - 27248057
Alignment:
Q  208 attcctaaattgccatataaagaaaccacttttatacatgaatcttaaaatttcaccacatacc 271  Q
    ||||||||||||  |||||||| |||||||||||   | |||||||||||||||||||||||||    
T  27248120 attcctaaattgatatataaaggaaccacttttacctaagaatcttaaaatttcaccacatacc 27248057  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 38 - 124
Target Start/End: Original strand, 12879949 - 12880036
Alignment:
Q  38 gggatctaacgtcctct-agatgtcttgttgcttctcaatcacccaaaatgtcatacatgtaatacggggtaaagggtcgtcactcct 124  Q
    ||||||||||||||  | ||||||| ||| ||| |||||||| |  ||| |||||||||| |||||  ||||||||||||||||||||    
T  12879949 gggatctaacgtccattcagatgtcatgtagctcctcaatcagcttaaaggtcatacatgcaatacaaggtaaagggtcgtcactcct 12880036  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 207 - 278
Target Start/End: Original strand, 28438822 - 28438893
Alignment:
Q  207 tattcctaaattgccatataaagaaaccacttttatacatgaatcttaaaatttcaccacatacctttgctt 278  Q
    ||||||||||||| |||  |||||||||| |||||   |||||||| | |||||||||||||| ||||||||    
T  28438822 tattcctaaattgtcatcaaaagaaaccatttttacctatgaatctcagaatttcaccacatatctttgctt 28438893  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 208 - 270
Target Start/End: Original strand, 7706936 - 7706998
Alignment:
Q  208 attcctaaattgccatataaagaaaccacttttatacatgaatcttaaaatttcaccacatac 270  Q
    |||| ||||||| ||| ||||| ||||||||||| | |  |||||||||||||||||||||||    
T  7706936 attcttaaattgtcatctaaaggaaccacttttacatacaaatcttaaaatttcaccacatac 7706998  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 207 - 267
Target Start/End: Complemental strand, 11005126 - 11005066
Alignment:
Q  207 tattcctaaattgccatataaagaaaccacttttatacatgaatcttaaaatttcaccaca 267  Q
    |||||||||| || ||| ||||| |||||||||||   |||||||||| ||||||||||||    
T  11005126 tattcctaaagtgtcatctaaaggaaccacttttacctatgaatcttagaatttcaccaca 11005066  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 29 - 96
Target Start/End: Original strand, 32197577 - 32197645
Alignment:
Q  29 tagtttgatgggatctaacgt-cctctagatgtcttgttgcttctcaatcacccaaaatgtcatacatg 96  Q
    ||||||| ||||||||||||| ||| ||||||||  |||| | |||||||||||||||  |||||||||    
T  32197577 tagtttggtgggatctaacgtccctgtagatgtcaagttgttcctcaatcacccaaaagatcatacatg 32197645  T

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