View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12897_high_6 (Length: 239)
Name: NF12897_high_6
Description: NF12897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12897_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 39528670 - 39528443
Alignment:
| Q |
1 |
cagggatactgcagggcaagaaagatttagaagcctcattccaagttatataagagattcttcggtcgccgttattgtgtatgacgttgctagtaagtgt |
100 |
Q |
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| T |
39528670 |
cagggatactgcagggcaagaaagatttagaagcctcattccaagttatataagagattcttcggtcgccgttattgtgtatgacgttgctagtaagtat |
39528571 |
T |
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| Q |
101 |
taacnnnnnnngttcttctaaaagaaacaatagcaatagcatggttgtgtttttaagtc--tatagattttcttgtgacataattattccaaactatttg |
198 |
Q |
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| T |
39528570 |
taactttctttgttcttctaaaagaaacaatagcaatagcatggttgtgtttttaagtctgtatagattttcttgtgacataattattccaaactatttg |
39528471 |
T |
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| Q |
199 |
ctaacgttaaagattttatagcatgtga |
226 |
Q |
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| T |
39528470 |
ccaacgttaaagattttatagcatgtga |
39528443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 37853280 - 37853183
Alignment:
| Q |
1 |
cagggatactgcagggcaagaaagatttagaagcctcattccaagttatataagagattcttcggtcgccgttattgtgtatgacgttgctagtaagt |
98 |
Q |
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||||||||||||||| ||||||||||||||||| ||||||||||| || |||||||||||||| || || |||||||| ||||| || || ||||||| |
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| T |
37853280 |
cagggatactgcaggccaagaaagatttagaagtctcattccaagctacataagagattcttctgttgctgttattgtatatgatgtagccagtaagt |
37853183 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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