View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12897_low_3 (Length: 326)

Name: NF12897_low_3
Description: NF12897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12897_low_3
NF12897_low_3
[»] chr3 (8 HSPs)
chr3 (1-320)||(19603339-19603654)
chr3 (77-244)||(19581100-19581260)
chr3 (87-171)||(19538828-19538912)
chr3 (4-52)||(19581285-19581333)
chr3 (87-244)||(18479472-18479630)
chr3 (4-42)||(19593440-19593478)
chr3 (80-171)||(19563242-19563329)
chr3 (193-244)||(19538753-19538805)
[»] chr4 (1 HSPs)
chr4 (249-319)||(19068791-19068861)
[»] chr7 (2 HSPs)
chr7 (254-320)||(3205551-3205616)
chr7 (260-319)||(3896125-3896184)


Alignment Details
Target: chr3 (Bit Score: 203; Significance: 1e-111; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 320
Target Start/End: Complemental strand, 19603654 - 19603339
Alignment:
Q  1 gacatgattttacctttgcttctttttaattatcgtatttgtaaaattcattgnnnnnnnnnnnnnnnnnnnnnnaaagtttaatataatattaattgtt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||                      |||||||||||||||||||||| ||    
T  19603654 gacatgattttacctttgcttctttttaattatcgtatttgtaaaattcattgtttttatttttttgtcgtttttaaagtttaatataatattaattatt 19603555  T
Q  101 attttgtcaataatgcccttatttatatgttgcaaatagtgatatagcatgagataatgaaaatgattctannnnnnnnnnnnnnattgtatcaaattaa 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||              |||||||||||||||    
T  19603554 attttgtcaataatgcccttatttatatgttgcaaatagtgatatagcatgagataatgaaaatgattctatttttttttt----attgtatcaaattaa 19603459  T
Q  201 actaattaaactttattggttgtcttgatatttgtaaaatgtcaccaacaccgaattacatggcagcctcctggagtaggccgatataaatgtaatattg 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19603458 actaattaaactttattggttgtcttgatatttgtaaaatgtcaccaacaccgaattacatggcagcctcctggagtaggccgatataaatgtaatattg 19603359  T
Q  301 aagcagcgttttcttctcac 320  Q
    ||||||||||||||||||||    
T  19603358 aagcagcgttttcttctcac 19603339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 77 - 244
Target Start/End: Complemental strand, 19581260 - 19581100
Alignment:
Q  77 aagtttaatataatattaattgttattttgtcaataatgcccttatttatatgttgcaaatagtgatatagcatgagataatgaaaatgattctannnnn 176  Q
    ||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||         
T  19581260 aagtttaatataatattaattattattttg-caataatgcccttatttatatgttgcaaagagtgatatagcatgagataatgaaaatgattcta-tatt 19581163  T
Q  177 nnnnnnnnnattgtatcaaattaaactaattaaactttattggttgtcttgatatttgtaaaatgtca 244  Q
             ||||||||||||||||||     ||||||||||||||||||||||||||||||||||||    
T  19581162 tatttttttattgtatcaaattaaact-----aactttattggttgtcttgatatttgtaaaatgtca 19581100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 87 - 171
Target Start/End: Complemental strand, 19538912 - 19538828
Alignment:
Q  87 taatattaattgttattttgtcaataatgcccttatttatatgttgcaaatagtgatatagcatgagataatgaaaatgattcta 171  Q
    ||||||||||  ||||||||||||| |||| ||||||||| ||||||||| ||||||||| | ||| ||||||||||||||||||    
T  19538912 taatattaatgattattttgtcaatgatgcgcttatttatgtgttgcaaagagtgatataacttgaaataatgaaaatgattcta 19538828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 4 - 52
Target Start/End: Complemental strand, 19581333 - 19581285
Alignment:
Q  4 atgattttacctttgcttctttttaattatcgtatttgtaaaattcatt 52  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||    
T  19581333 atgattttacctttgcttctttttaattatcgtatttgtaaaaatcatt 19581285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 87 - 244
Target Start/End: Original strand, 18479472 - 18479630
Alignment:
Q  87 taatattaattgttattttgtcaataatgcccttatttatatgttgcaaatagtgatatagcatgagataatgaaaatgattctannnnnnnnnnnnnna 186  Q
    ||||||||||  ||||||||||||| |||| ||||||||| | | ||||| ||||||||||| ||| ||||||||||||| ||||              |    
T  18479472 taatattaatgattattttgtcaatgatgcgcttatttatgtttagcaaagagtgatatagcttgaaataatgaaaatgaatcta-taaaaaagttttta 18479570  T
Q  187 ttg--tatcaaattaaactaattaaactttattggttgtcttgatatttgtaaaatgtca 244  Q
    |||  |||||||||||| |||| ||| ||||||| |||||||||||||||||||||||||    
T  18479571 ttgtatatcaaattaaagtaataaaattttattgcttgtcttgatatttgtaaaatgtca 18479630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 4 - 42
Target Start/End: Complemental strand, 19593478 - 19593440
Alignment:
Q  4 atgattttacctttgcttctttttaattatcgtatttgt 42  Q
    ||||||||||||||||||||||||||||||| |||||||    
T  19593478 atgattttacctttgcttctttttaattatcttatttgt 19593440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 80 - 171
Target Start/End: Complemental strand, 19563329 - 19563242
Alignment:
Q  80 tttaatataatattaattgttattttgtcaataatgcccttatttatatgttgcaaatagtgatatagcatgagataatgaaaatgattcta 171  Q
    |||||| ||||||||||  ||||||||||   ||||| ||||||||| ||||||||| |||||| |||| ||| |||||| |||||||||||    
T  19563329 tttaatgtaatattaatgattattttgtc---aatgcgcttatttatgtgttgcaaagagtgatgtagcttgaaataatg-aaatgattcta 19563242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 193 - 244
Target Start/End: Complemental strand, 19538805 - 19538753
Alignment:
Q  193 caaattaaactaattaaacttt-attggttgtcttgatatttgtaaaatgtca 244  Q
    ||||||||| |||| ||| ||| ||||||| ||||||||||||||||||||||    
T  19538805 caaattaaagtaataaaaattttattggttttcttgatatttgtaaaatgtca 19538753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 249 - 319
Target Start/End: Original strand, 19068791 - 19068861
Alignment:
Q  249 caccgaattacatggcagcctcctggagtaggccgatataaatgtaatattgaagcagcgttttcttctca 319  Q
    ||||| ||||||||||||| ||||||||||||||||||||||||||||||||| ||||| || ||||||||    
T  19068791 caccgcattacatggcagcttcctggagtaggccgatataaatgtaatattgatgcagctttctcttctca 19068861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 254 - 320
Target Start/End: Complemental strand, 3205616 - 3205551
Alignment:
Q  254 aattacatggcagcctcctggagtaggccgatataaatgtaatattgaagcagcgttttcttctcac 320  Q
    |||||||||||||||| |||| |||||||| || |||||||||||||| ||||| || |||||||||    
T  3205616 aattacatggcagccttctgg-gtaggccgctagaaatgtaatattgacgcagctttctcttctcac 3205551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 260 - 319
Target Start/End: Original strand, 3896125 - 3896184
Alignment:
Q  260 atggcagcctcctggagtaggccgatataaatgtaatattgaagcagcgttttcttctca 319  Q
    ||||||||||||||||||||||||||| |||||||| |  || ||| | |||||||||||    
T  3896125 atggcagcctcctggagtaggccgatacaaatgtaacaacgatgcaaccttttcttctca 3896184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University