View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12897_low_5 (Length: 273)

Name: NF12897_low_5
Description: NF12897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12897_low_5
NF12897_low_5
[»] chr4 (5 HSPs)
chr4 (1-273)||(48911877-48912149)
chr4 (105-253)||(48962686-48962834)
chr4 (87-273)||(48965701-48965887)
chr4 (121-261)||(48958531-48958671)
chr4 (152-239)||(48951640-48951727)
[»] scaffold0536 (3 HSPs)
scaffold0536 (7-273)||(6049-6315)
scaffold0536 (7-273)||(10033-10299)
scaffold0536 (168-246)||(1164-1242)
[»] chr6 (1 HSPs)
chr6 (87-273)||(12589787-12589973)
[»] chr5 (2 HSPs)
chr5 (108-267)||(28385712-28385871)
chr5 (108-229)||(12541101-12541222)
[»] chr2 (3 HSPs)
chr2 (120-234)||(13440611-13440725)
chr2 (121-265)||(13448743-13448887)
chr2 (121-267)||(13455212-13455358)
[»] chr8 (1 HSPs)
chr8 (110-226)||(12641122-12641238)


Alignment Details
Target: chr4 (Bit Score: 253; Significance: 1e-141; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 1 - 273
Target Start/End: Original strand, 48911877 - 48912149
Alignment:
Q  1 tcctcatcttcctcattctattgccatgaatgcagcaccaccgaagcagctgagtaaattgttggaagcgcttcttgagacagttttcaaaagtaacgga 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  48911877 tcctcatcttcctcattctattgccatgaatgcagcaccaccgaagcagctgagtaaattattggaagcgcttcttgagacagttttcaaaagtaacgga 48911976  T
Q  101 atccttgtcaacaattttgctgaacttgacggtgaagagtatatcgaacactacgagaaaactacttgtcacaaagcttggcatcttggtccagcttctc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48911977 atccttgtcaacaattttgctgaacttgacggtgaagagtatatcgaacactacgagaaaactacttgtcacaaagcttggcatcttggtccagcttctc 48912076  T
Q  201 ttattcgcacaactattcaagagaaagcacagagaggagaagagagtgttgtgagtgtgcacgagtgtttgag 273  Q
    ||||||||| ||||||||||||||| ||  |||||||||||||||||||||||||||||||||||||||||||    
T  48912077 ttattcgcagaactattcaagagaaggctgagagaggagaagagagtgttgtgagtgtgcacgagtgtttgag 48912149  T

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Target: chr4; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 105 - 253
Target Start/End: Complemental strand, 48962834 - 48962686
Alignment:
Q  105 ttgtcaacaattttgctgaacttgacggtgaagagtatatcgaacactacgagaaaactacttgtcacaaagcttggcatcttggtccagcttctcttat 204  Q
    |||||||||| || ||||||||||||||||||||||  |||||||||||||||||||| ||  ||||||| ||||||||||| ||||||| |||||||||    
T  48962834 ttgtcaacaacttcgctgaacttgacggtgaagagtgcatcgaacactacgagaaaaccacgggtcacaaggcttggcatctcggtccagtttctcttat 48962735  T
Q  205 tcgcacaactattcaagagaaagcacagagaggagaagagagtgttgtg 253  Q
    ||||| | |  |||||||||||||| | || ||| | ||||||||||||    
T  48962734 tcgcaaatccgttcaagagaaagcagaaaggggacatgagagtgttgtg 48962686  T

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Target: chr4; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 87 - 273
Target Start/End: Complemental strand, 48965887 - 48965701
Alignment:
Q  87 tcaaaagtaacggaatccttgtcaacaattttgctgaacttgacggtgaagagtatatcgaacactacgagaaaactacttgtcacaaagcttggcatct 186  Q
    |||||||||| ||| || ||||||||||||| ||||| |||||||| |||||||| ||  || | || | ||  |  ||  |||| || |||||||||||    
T  48965887 tcaaaagtaatggactcattgtcaacaatttcgctgagcttgacggggaagagtacattaaatattatgtgagtagcacgggtcataaggcttggcatct 48965788  T
Q  187 tggtccagcttctcttattcgcacaactattcaagagaaagcacagagaggagaagagagtgttgtgagtgtgcacgagtgtttgag 273  Q
    ||||||||||||||||||||| | |||| |||||||||||||| |||| ||| |||||||||  ||||| ||||| |||||||||||    
T  48965787 tggtccagcttctcttattcgtaaaactgttcaagagaaagcagagaggggacaagagagtgcagtgagcgtgcaagagtgtttgag 48965701  T

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Target: chr4; HSP #4
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 121 - 261
Target Start/End: Complemental strand, 48958671 - 48958531
Alignment:
Q  121 tgaacttgacggtgaagagtatatcgaacactacgagaaaactacttgtcacaaagcttggcatcttggtccagcttctcttattcgcacaactattcaa 220  Q
    ||||||||| ||||||||||  |||||||||||| ||||||  ||  ||||||| | ||||||||||||||| |||||||||||||||  ||| ||||||    
T  48958671 tgaacttgatggtgaagagtgcatcgaacactacaagaaaatcacgggtcacaaggtttggcatcttggtcctgcttctcttattcgccaaaccattcaa 48958572  T
Q  221 gagaaagcacagagaggagaagagagtgttgtgagtgtgca 261  Q
    |||||| || |||| ||| | |||| |||||| ||||||||    
T  48958571 gagaaatcagagaggggaaatgagaatgttgttagtgtgca 48958531  T

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Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 152 - 239
Target Start/End: Complemental strand, 48951727 - 48951640
Alignment:
Q  152 tacgagaaaactacttgtcacaaagcttggcatcttggtccagcttctcttattcgcacaactattcaagagaaagcacagagaggag 239  Q
    ||||||||||| |   ||||||| ||||||||||||||||| || |||||| |||||| ||||| ||||||||| ||| | |||||||    
T  48951727 tacgagaaaaccatcggtcacaaggcttggcatcttggtccggcctctcttgttcgcaaaactactcaagagaaggcaaatagaggag 48951640  T

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Target: scaffold0536 (Bit Score: 159; Significance: 1e-84; HSPs: 3)
Name: scaffold0536
Description:

Target: scaffold0536; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 7 - 273
Target Start/End: Original strand, 6049 - 6315
Alignment:
Q  7 tcttcctcattctattgccatgaatgcagcaccaccgaagcagctgagtaaattgttggaagcgcttcttgagacagttttcaaaagtaacggaatcctt 106  Q
    |||||||||||||||||||||||||||||| || ||||||||| ||||| | || |||||||||||| | ||||| ||||||||||| ||||||||| ||    
T  6049 tcttcctcattctattgccatgaatgcagctccgccgaagcagatgagtgacttattggaagcgcttttggagacggttttcaaaagcaacggaatcatt 6148  T
Q  107 gtcaacaattttgctgaacttgacggtgaagagtatatcgaacactacgagaaaactacttgtcacaaagcttggcatcttggtccagcttctcttattc 206  Q
    || ||||||||| |||||||||||||||||||||| |||||||||||||||||||||||  ||||||||||||||||||||||||| |||||||||||||    
T  6149 gttaacaatttttctgaacttgacggtgaagagtacatcgaacactacgagaaaactacaggtcacaaagcttggcatcttggtccggcttctcttattc 6248  T
Q  207 gcacaactattcaagagaaagcacagagaggagaagagagtgttgtgagtgtgcacgagtgtttgag 273  Q
    | | |||| ||||||| ||||||||||| ||| || | ||||||||||||||||| |||||| ||||    
T  6249 gtagaactgttcaagaaaaagcacagaggggacaacaaagtgttgtgagtgtgcatgagtgtctgag 6315  T

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Target: scaffold0536; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 7 - 273
Target Start/End: Original strand, 10033 - 10299
Alignment:
Q  7 tcttcctcattctattgccatgaatgcagcaccaccgaagcagctgagtaaattgttggaagcgcttcttgagacagttttcaaaagtaacggaatcctt 106  Q
    ||||||||||||||||| |||||||||| |||| || |||||| ||||| || | |||| || || | | ||||  |||||||||||| | || ||||||    
T  10033 tcttcctcattctattgtcatgaatgcaacaccgcctaagcagatgagtgaaatcttgggagagcgtttggagatggttttcaaaagtcaagggatcctt 10132  T
Q  107 gtcaacaattttgctgaacttgacggtgaagagtatatcgaacactacgagaaaactacttgtcacaaagcttggcatcttggtccagcttctcttattc 206  Q
    ||||| |||||||  |||||||||||| || || | |||||||||||| ||||||||||  |||| ||||||||||||||| ||||||||| |||| |||    
T  10133 gtcaataattttgtagaacttgacggtaaatagcacatcgaacactacaagaaaactacgggtcagaaagcttggcatcttagtccagcttatcttgttc 10232  T
Q  207 gcacaactattcaagagaaagcacagagaggagaagagagtgttgtgagtgtgcacgagtgtttgag 273  Q
    | | |||| ||||||||||| || ||||||||||| ||||||||||||||||||| |||||| ||||    
T  10233 gtagaactgttcaagagaaaacagagagaggagaacagagtgttgtgagtgtgcatgagtgtctgag 10299  T

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Target: scaffold0536; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 168 - 246
Target Start/End: Original strand, 1164 - 1242
Alignment:
Q  168 gtcacaaagcttggcatcttggtccagcttctcttattcgcacaactattcaagagaaagcacagagaggagaagagag 246  Q
    ||||||| ||||||| |||||| ||||| |||||| |||||| ||| | ||||||||||||| | || |||||| ||||    
T  1164 gtcacaaggcttggcttcttggcccagcatctcttgttcgcaaaaccactcaagagaaagcaaataggggagaaaagag 1242  T

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Target: chr6 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 87 - 273
Target Start/End: Original strand, 12589787 - 12589973
Alignment:
Q  87 tcaaaagtaacggaatccttgtcaacaattttgctgaacttgacggtgaagagtatatcgaacactacgagaaaactacttgtcacaaagcttggcatct 186  Q
    |||||||||| ||| || |||| ||||| || ||||||||||| ||  |||||| | || ||||||| |||||||| ||  ||||||| |||||||||||    
T  12589787 tcaaaagtaatggactcattgttaacaacttcgctgaacttgatggccaagagtgtgtcaaacactatgagaaaaccacaggtcacaaggcttggcatct 12589886  T
Q  187 tggtccagcttctcttattcgcacaactattcaagagaaagcacagagaggagaagagagtgttgtgagtgtgcacgagtgtttgag 273  Q
    |||||||||||||||||||| || |||| |||||||||||||| | || ||| | |||||||||||||  ||||| |||||| ||||    
T  12589887 tggtccagcttctcttattcacaaaactgttcaagagaaagcagataggggaaatgagagtgttgtgaacgtgcaagagtgtctgag 12589973  T

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Target: chr5 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 108 - 267
Target Start/End: Complemental strand, 28385871 - 28385712
Alignment:
Q  108 tcaacaattttgctgaacttgacggtgaagagtatatcgaacactacgagaaaactacttgtcacaaagcttggcatcttggtccagcttctcttattcg 207  Q
    ||||||| |||| ||||||||| || ||||||| | || |||||||||||||||| ||  ||||||| |||||||||||||||||| ||||  |||||||    
T  28385871 tcaacaactttgttgaacttgatggagaagagtgtgtcaaacactacgagaaaaccacgggtcacaaggcttggcatcttggtccaacttcctttattcg 28385772  T
Q  208 cacaactattcaagagaaagcacagagaggagaagagagtgttgtgagtgtgcacgagtg 267  Q
     | |||| |||||||||||||| |||  ||| |  |||||| |||||| | |||||||||    
T  28385771 taaaactgttcaagagaaagcagagaagggaaacaagagtgatgtgagcgagcacgagtg 28385712  T

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Target: chr5; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 108 - 229
Target Start/End: Complemental strand, 12541222 - 12541101
Alignment:
Q  108 tcaacaattttgctgaacttgacggtgaagagtatatcgaacactacgagaaaactacttgtcacaaagcttggcatcttggtccagcttctcttattcg 207  Q
    ||||||| |||| ||||||||| || ||||||| | || |||||||||||||||| ||  ||||||| |||||||||||||||||| ||||| ||||||     
T  12541222 tcaacaactttgttgaacttgatggagaagagtgtgtccaacactacgagaaaaccacgggtcacaaggcttggcatcttggtccaacttcttttattca 12541123  T
Q  208 cacaactattcaagagaaagca 229  Q
     | ||  |||||||||||||||    
T  12541122 gaaaaacattcaagagaaagca 12541101  T

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Target: chr2 (Bit Score: 51; Significance: 3e-20; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 120 - 234
Target Start/End: Complemental strand, 13440725 - 13440611
Alignment:
Q  120 ctgaacttgacggtgaagagtatatcgaacactacgagaaaactacttgtcacaaagcttggcatcttggtccagcttctcttattcgcacaactattca 219  Q
    ||||||||||||| |||||||  ||| ||||||| |||||||| ||  ||||||| | ||||||||| |||||| ||||||||||||| | ||| |||||    
T  13440725 ctgaacttgacggagaagagtgcatccaacactatgagaaaaccacgggtcacaaggtttggcatctcggtccaacttctcttattcgtaaaaccattca 13440626  T
Q  220 agagaaagcacagag 234  Q
    |||||||||| ||||    
T  13440625 agagaaagcagagag 13440611  T

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Target: chr2; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 121 - 265
Target Start/End: Complemental strand, 13448887 - 13448743
Alignment:
Q  121 tgaacttgacggtgaagagtatatcgaacactacgagaaaactacttgtcacaaagcttggcatcttggtccagcttctcttattcgcacaactattcaa 220  Q
    ||||||||| || |||||||  ||  |||||||||||||| | ||  ||||||| | |||||||||||||||| ||||||||||||||| ||||  ||||    
T  13448887 tgaacttgatggagaagagtgcatacaacactacgagaaagccacgggtcacaaggtttggcatcttggtccaacttctcttattcgcaaaactgctcaa 13448788  T
Q  221 gagaaagcacagagaggagaagagagtgttgtgagtgtgcacgag 265  Q
    |||||| || |||| ||| | ||| ||| ||||| ||||||||||    
T  13448787 gagaaatcagagaggggaaatgagggtgctgtgaatgtgcacgag 13448743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 121 - 267
Target Start/End: Complemental strand, 13455358 - 13455212
Alignment:
Q  121 tgaacttgacggtgaagagtatatcgaacactacgagaaaactacttgtcacaaagcttggcatcttggtccagcttctcttattcgcacaactattcaa 220  Q
    |||| |||| || |||||||  ||| |||||||||| ||||| ||  ||||||| | ||||||| |||||||| ||||||||||| ||| |||  |||||    
T  13455358 tgaatttgatggagaagagtgcatccaacactacgaaaaaacaacaggtcacaaggtttggcatattggtccaacttctcttatttgcagaaccgttcaa 13455259  T
Q  221 gagaaagcacagagaggagaagagagtgttgtgagtgtgcacgagtg 267  Q
    || ||| || |||| ||| | |||  | |||||| ||| ||||||||    
T  13455258 gaaaaatcagagaggggaaacgaggtttttgtgaatgtacacgagtg 13455212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 110 - 226
Target Start/End: Original strand, 12641122 - 12641238
Alignment:
Q  110 aacaattttgctgaacttgacggtgaagagtatatcgaacactacgagaaaactacttgtcacaaagcttggcatcttggtccagcttctcttattcgca 209  Q
    ||||| |||| ||||||||| |||||||| |  ||| ||||||| |||||||| |   || |||| |||||||||||||||||| ||| |||||||||||    
T  12641122 aacaactttgttgaacttgatggtgaagattgcatcaaacactatgagaaaaccatgggttacaaggcttggcatcttggtccaacttgtcttattcgca 12641221  T
Q  210 caactattcaagagaaa 226  Q
     |||| || ||||||||    
T  12641222 aaacttttgaagagaaa 12641238  T

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