View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12898_high_16 (Length: 332)
Name: NF12898_high_16
Description: NF12898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12898_high_16 |
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Alignment Details
Target: chr4 (Bit Score: 111; Significance: 5e-56; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 195 - 317
Target Start/End: Original strand, 13336088 - 13336210
Alignment:
| Q |
195 |
taatcacagcaagacccaagttccactttttctgttcatatctccgtctccgtcgtactccttcctctcaccatccatcccttcccgtaatctccgtcgt |
294 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| |
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| T |
13336088 |
taatcacagcaagacccaagttccactttttctgttcatatctccgtctccgtcgtactccttcctctcaccatccatcccttcccataatctccgccgt |
13336187 |
T |
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| Q |
295 |
actcctccctctcttagtctgtg |
317 |
Q |
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|||||||||||||| |||||||| |
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| T |
13336188 |
actcctccctctctgagtctgtg |
13336210 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 91 - 132
Target Start/End: Original strand, 13335984 - 13336025
Alignment:
| Q |
91 |
taatggtgttgatgttttgtagctgtgaatgttgttaatttt |
132 |
Q |
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| T |
13335984 |
taatggtgttgatgttttgtagctgtgaatgttgttaatttt |
13336025 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 110; Significance: 2e-55; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 19 - 132
Target Start/End: Original strand, 4462498 - 4462611
Alignment:
| Q |
19 |
aattcacacacacaaattccaaactcaaaaaattctaatcctagaaatttcaaatttgacagttattaggtttaatggtgttgatgttttgtagctgtga |
118 |
Q |
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| T |
4462498 |
aattcacacaaacaaattccaaactcaaaaaattctaatcctagaaatttcaaatttgacagttattaggtttaatggtgttgatgttttgtagctgtga |
4462597 |
T |
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| Q |
119 |
atgttgttaatttt |
132 |
Q |
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| T |
4462598 |
atgttgttaatttt |
4462611 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 195 - 317
Target Start/End: Original strand, 4462674 - 4462796
Alignment:
| Q |
195 |
taatcacagcaagacccaagttccactttttctgttcatatctccgtctccgtcgtactccttcctctcaccatccatcccttcccgtaatctccgtcgt |
294 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| | | |
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| T |
4462674 |
taatcacagcaagacccaagttcctctttttctgttcatatctccgtctccgtcgtactcctccctctcaccatccattccttcccgtaatctccgccat |
4462773 |
T |
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| Q |
295 |
actcctccctctcttagtctgtg |
317 |
Q |
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|||||||||||||| |||||||| |
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| T |
4462774 |
actcctccctctctgagtctgtg |
4462796 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 110; Significance: 2e-55; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 19 - 132
Target Start/End: Complemental strand, 36381168 - 36381055
Alignment:
| Q |
19 |
aattcacacacacaaattccaaactcaaaaaattctaatcctagaaatttcaaatttgacagttattaggtttaatggtgttgatgttttgtagctgtga |
118 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36381168 |
aattcacacaaacaaattccaaactcaaaaaattctaatcctagaaatttcaaatttgacagttattaggtttaatggtgttgatgttttgtagctgtga |
36381069 |
T |
|
| Q |
119 |
atgttgttaatttt |
132 |
Q |
| |
|
|||||||||||||| |
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|
| T |
36381068 |
atgttgttaatttt |
36381055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 195 - 299
Target Start/End: Complemental strand, 36380992 - 36380884
Alignment:
| Q |
195 |
taatcacagcaaga----cccaagttccactttttctgttcatatctccgtctccgtcgtactccttcctctcaccatccatcccttcccgtaatctccg |
290 |
Q |
| |
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|||||||||||||| |||||||||| | ||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| |||||||||| |
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| T |
36380992 |
taatcacagcaagacccacccaagttcctccttttctgttcatatctccgtctccgtcgtactcctccctctcaacatccatcccttctcgtaatctcca |
36380893 |
T |
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| Q |
291 |
tcgtactcc |
299 |
Q |
| |
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|||||||| |
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| T |
36380892 |
ccgtactcc |
36380884 |
T |
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