View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12898_high_21 (Length: 279)
Name: NF12898_high_21
Description: NF12898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12898_high_21 |
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Alignment Details
Target: chr5 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 12 - 262
Target Start/End: Complemental strand, 27313945 - 27313695
Alignment:
| Q |
12 |
agagaatatatatataaaacctaatagactctaaactaataggctcgttagcatagcccattactttattatcgaacatggattaggtttcaatcgcctt |
111 |
Q |
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| T |
27313945 |
agagaatatatatataaaacctaataaactctaaactaataggctcgttagcatagcccattactttattatcgaacatggattaggtttcaatcgcttt |
27313846 |
T |
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| Q |
112 |
ttatctaatgtttcatcttaattgatcatatacnnnnnnngcttcaaatataactccacctattcctcaacatgcattttcatttcaagacaacaacgag |
211 |
Q |
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| T |
27313845 |
tcatctaatgtttcatcttaattgatcatatactttttttgcttcaaatataactccacctatccctcaacatacattttcatttcaagacaacaatgag |
27313746 |
T |
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| Q |
212 |
atccattaagttacatatggtggtgcctcagttaatcttattccaagagtt |
262 |
Q |
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| T |
27313745 |
atccattgagttacatatggtggtgcctcagtcaatcttattccatgagtt |
27313695 |
T |
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Target: chr7 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 20 - 89
Target Start/End: Original strand, 11827948 - 11828017
Alignment:
| Q |
20 |
tatatataaaacctaatagactctaaactaataggctcgttagcatagcccattactttattatcgaaca |
89 |
Q |
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| T |
11827948 |
tatatataaaacctaattgactctaaactaataggcctaatagcatagcccattactttattatctaaca |
11828017 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 92 - 144
Target Start/End: Original strand, 31611487 - 31611539
Alignment:
| Q |
92 |
gattaggtttcaatcgccttttatctaatgtttcatcttaattgatcatatac |
144 |
Q |
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| T |
31611487 |
gattaggtttcaatagtttttcatcaaatgtttcatcttaatcgatcatatac |
31611539 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 19 - 89
Target Start/End: Complemental strand, 43516204 - 43516134
Alignment:
| Q |
19 |
atatatataaaacctaatagactctaaactaataggctcgttagcatagcccattactttattatcgaaca |
89 |
Q |
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| T |
43516204 |
atatatataaaacctaatggactctaaactaacaggaccaatagcatagcccattattttattatcaaaca |
43516134 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 152 - 195
Target Start/End: Original strand, 11222642 - 11222685
Alignment:
| Q |
152 |
gcttcaaatataactccacctattcctcaacatgcattttcatt |
195 |
Q |
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| T |
11222642 |
gcttcaaatataacttcacctattcctcaacatacatcttcatt |
11222685 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 50
Target Start/End: Original strand, 28064690 - 28064728
Alignment:
| Q |
12 |
agagaatatatatataaaacctaatagactctaaactaa |
50 |
Q |
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| T |
28064690 |
agagaatataaatataaaacctaatggactctaaactaa |
28064728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 89
Target Start/End: Complemental strand, 30435687 - 30435617
Alignment:
| Q |
19 |
atatatataaaacctaatagactctaaactaataggctcgttagcatagcccattactttattatcgaaca |
89 |
Q |
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|
|||||||||||||||||| ||||||||| | |||| | ||||||||| ||||||||||||||| |||| |
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| T |
30435687 |
atatatataaaacctaatgaactctaaaccgacaggcccaatagcatagctcattactttattatctaaca |
30435617 |
T |
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