View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12898_high_24 (Length: 254)

Name: NF12898_high_24
Description: NF12898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12898_high_24
NF12898_high_24
[»] chr7 (4 HSPs)
chr7 (65-246)||(36943313-36943495)
chr7 (80-117)||(34235587-34235624)
chr7 (79-115)||(17749724-17749760)
chr7 (79-115)||(24539237-24539273)
[»] chr8 (3 HSPs)
chr8 (76-117)||(6387588-6387629)
chr8 (71-102)||(32587535-32587566)
chr8 (79-118)||(39455658-39455697)
[»] chr1 (3 HSPs)
chr1 (79-115)||(13114784-13114820)
chr1 (79-115)||(50424980-50425016)
chr1 (79-115)||(50773225-50773261)
[»] scaffold0095 (1 HSPs)
scaffold0095 (79-118)||(14043-14082)
[»] chr4 (2 HSPs)
chr4 (75-118)||(40662036-40662079)
chr4 (79-117)||(20454570-20454608)
[»] chr5 (1 HSPs)
chr5 (80-118)||(16875376-16875414)
[»] chr3 (7 HSPs)
chr3 (69-119)||(33164940-33164990)
chr3 (75-117)||(37926557-37926599)
chr3 (79-117)||(41707551-41707589)
chr3 (79-116)||(27243075-27243112)
chr3 (79-116)||(50661635-50661672)
chr3 (71-99)||(41170803-41170831)
chr3 (73-117)||(46450089-46450133)


Alignment Details
Target: chr7 (Bit Score: 121; Significance: 4e-62; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 65 - 246
Target Start/End: Complemental strand, 36943495 - 36943313
Alignment:
Q  65 gagatatatgaacactctctaacactcactctcttattagataaaatcaatgtgaaagaatgaatgttagagaaactgttaa-aaaatatgtacatgatt 163  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  36943495 gagatatatgaacactctctaacactcactctcttattagataaaatcaatgtgaaagaatgaatgttagagaaactgttaaaaaaatatgtacatgatt 36943396  T
Q  164 ctcattnnnnnnnnnnnnnnnnnntttaagataagatcgtctttgttttccaactttactttaaagtatttatgctctctgct 246  Q
    ||||||                  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36943395 ctcattaaaaaaataaataaaaaatttaagataagatcgtctttgttttccaactttactttaaagtatttatgctctctgct 36943313  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 80 - 117
Target Start/End: Original strand, 34235587 - 34235624
Alignment:
Q  80 tctctaacactcactctcttattagataaaatcaatgt 117  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  34235587 tctctaacactcactttcttattagataaaatcaatgt 34235624  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 115
Target Start/End: Original strand, 17749724 - 17749760
Alignment:
Q  79 ctctctaacactcactctcttattagataaaatcaat 115  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  17749724 ctctctaacactcactcttttattggataaaatcaat 17749760  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 115
Target Start/End: Complemental strand, 24539273 - 24539237
Alignment:
Q  79 ctctctaacactcactctcttattagataaaatcaat 115  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  24539273 ctctctaacactcactcttttattggataaaatcaat 24539237  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 76 - 117
Target Start/End: Original strand, 6387588 - 6387629
Alignment:
Q  76 acactctctaacactcactctcttattagataaaatcaatgt 117  Q
    ||||||||||||||||||||| ||||| ||||||||||||||    
T  6387588 acactctctaacactcactcttttattggataaaatcaatgt 6387629  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 71 - 102
Target Start/End: Original strand, 32587535 - 32587566
Alignment:
Q  71 tatgaacactctctaacactcactctcttatt 102  Q
    ||||||||||||||||||||||||||||||||    
T  32587535 tatgaacactctctaacactcactctcttatt 32587566  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 79 - 118
Target Start/End: Complemental strand, 39455697 - 39455658
Alignment:
Q  79 ctctctaacactcactctcttattagataaaatcaatgtg 118  Q
    ||||||||||| |||||||||||||| |||||||||||||    
T  39455697 ctctctaacacccactctcttattaggtaaaatcaatgtg 39455658  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 79 - 115
Target Start/End: Complemental strand, 13114820 - 13114784
Alignment:
Q  79 ctctctaacactcactctcttattagataaaatcaat 115  Q
    |||||||||||||||||| ||||||||||||||||||    
T  13114820 ctctctaacactcactcttttattagataaaatcaat 13114784  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 115
Target Start/End: Complemental strand, 50425016 - 50424980
Alignment:
Q  79 ctctctaacactcactctcttattagataaaatcaat 115  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  50425016 ctctctaacactcactcttttattggataaaatcaat 50424980  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 115
Target Start/End: Complemental strand, 50773261 - 50773225
Alignment:
Q  79 ctctctaacactcactctcttattagataaaatcaat 115  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  50773261 ctctctaacactcactcttttattggataaaatcaat 50773225  T

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Target: scaffold0095 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0095
Description:

Target: scaffold0095; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 79 - 118
Target Start/End: Original strand, 14043 - 14082
Alignment:
Q  79 ctctctaacactcactctcttattagataaaatcaatgtg 118  Q
    ||||||||||| |||||||||||||| |||||||||||||    
T  14043 ctctctaacacccactctcttattaggtaaaatcaatgtg 14082  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 75 - 118
Target Start/End: Complemental strand, 40662079 - 40662036
Alignment:
Q  75 aacactctctaacactcactctcttattagataaaatcaatgtg 118  Q
    |||||||||||||| ||||||||||||| |||||||| ||||||    
T  40662079 aacactctctaacattcactctcttattggataaaattaatgtg 40662036  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 117
Target Start/End: Original strand, 20454570 - 20454608
Alignment:
Q  79 ctctctaacactcactctcttattagataaaatcaatgt 117  Q
    ||||||| |||||||||| ||||||||||||||||||||    
T  20454570 ctctctagcactcactcttttattagataaaatcaatgt 20454608  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 118
Target Start/End: Complemental strand, 16875414 - 16875376
Alignment:
Q  80 tctctaacactcactctcttattagataaaatcaatgtg 118  Q
    ||||||||||||||||||||||| | |||||||||||||    
T  16875414 tctctaacactcactctcttattgggtaaaatcaatgtg 16875376  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 119
Target Start/End: Complemental strand, 33164990 - 33164940
Alignment:
Q  69 tatatgaacactctctaacactcactctcttattagataaaatcaatgtga 119  Q
    |||| |||| || ||||||||||||||||||||| ||| ||||||||||||    
T  33164990 tataggaactctttctaacactcactctcttattggattaaatcaatgtga 33164940  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 75 - 117
Target Start/End: Original strand, 37926557 - 37926599
Alignment:
Q  75 aacactctctaacactcactctcttattagataaaatcaatgt 117  Q
    |||||||||||||||||||| ||||||||| | ||||||||||    
T  37926557 aacactctctaacactcactttcttattaggtgaaatcaatgt 37926599  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 117
Target Start/End: Complemental strand, 41707589 - 41707551
Alignment:
Q  79 ctctctaacactcactctcttattagataaaatcaatgt 117  Q
    |||||||||||||||||||| ||| ||||||||||||||    
T  41707589 ctctctaacactcactctctcattggataaaatcaatgt 41707551  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 79 - 116
Target Start/End: Original strand, 27243075 - 27243112
Alignment:
Q  79 ctctctaacactcactctcttattagataaaatcaatg 116  Q
    |||||||||||||||||| ||||| |||||||||||||    
T  27243075 ctctctaacactcactcttttattggataaaatcaatg 27243112  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 79 - 116
Target Start/End: Complemental strand, 50661672 - 50661635
Alignment:
Q  79 ctctctaacactcactctcttattagataaaatcaatg 116  Q
    |||||||||||| ||||| |||||||||||||||||||    
T  50661672 ctctctaacacttactcttttattagataaaatcaatg 50661635  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 99
Target Start/End: Complemental strand, 41170831 - 41170803
Alignment:
Q  71 tatgaacactctctaacactcactctctt 99  Q
    |||||||||||||||||||||||||||||    
T  41170831 tatgaacactctctaacactcactctctt 41170803  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 117
Target Start/End: Original strand, 46450089 - 46450133
Alignment:
Q  73 tgaacactctctaacactcactctcttattagataaaatcaatgt 117  Q
    ||||||||||||| |||||||||| |||||||||  |||||||||    
T  46450089 tgaacactctctagcactcactcttttattagatggaatcaatgt 46450133  T

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