View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12898_high_30 (Length: 234)
Name: NF12898_high_30
Description: NF12898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12898_high_30 |
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Alignment Details
Target: chr6 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 33636733 - 33636944
Alignment:
| Q |
1 |
gtttttatggggaaactcaagtgttaatacatgtagataaaaatacaaatcatatgcagataataagattttaaatgactctactttgataaagaatgta |
100 |
Q |
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| T |
33636733 |
gtttttatggggaaactcaagtgttaatacatgtagataaaaatacaaatcatatgcagataataagattttaaatgactctactttgataaagaatgta |
33636832 |
T |
|
| Q |
101 |
tgagtatcaatcaagaaaatcacagtagcagttgagctgacggcaaaaatgaataaacacggcgaaaggacatggcagatctccttcgacgaagatggtg |
200 |
Q |
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| T |
33636833 |
tgagtatcaatcaagaaaatcacagtagcagttgagctgacggcaaaaatgaataaacacggcgaaaggacatggcagatctccttcgacgaaga---tg |
33636929 |
T |
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| Q |
201 |
gtagctggagcttcg |
215 |
Q |
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||||||||||||||| |
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| T |
33636930 |
gtagctggagcttcg |
33636944 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 4691112 - 4691141
Alignment:
| Q |
1 |
gtttttatggggaaactcaagtgttaatac |
30 |
Q |
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| T |
4691112 |
gtttttatggggaaactcaagtgttaatac |
4691141 |
T |
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