View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12898_high_32 (Length: 228)
Name: NF12898_high_32
Description: NF12898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12898_high_32 |
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Alignment Details
Target: chr5 (Bit Score: 211; Significance: 1e-116; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 1034137 - 1034362
Alignment:
| Q |
1 |
ttctacacttctgatccggttgtaggttatacagactatccctttcttgaatgaagaaaacaatgttgtattgtagcatccaaggttggaagtggaacct |
100 |
Q |
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| T |
1034137 |
ttctacacttctgatccggttgtaggttatacggactatccctttcttgaatgaagaaaacaatgttgtattgtagcatccaaggttggaagtggaacct |
1034236 |
T |
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| Q |
101 |
ccatatttaataagttttttctccttgcaaatttgttcacttaattaagaattttgttgcttatagtagcattttttatccatactagcttcactgctac |
200 |
Q |
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| T |
1034237 |
ccatatttaataagttttttctccttgcaaatttgttcacttaattaagaattttgttgcttatagtagcattttttatccatactagcttcactgctac |
1034336 |
T |
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| Q |
201 |
gacacac--tgtgtaaactattatgt |
224 |
Q |
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| T |
1034337 |
gacacacagtgtgtaaactattatgt |
1034362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 1044524 - 1044613
Alignment:
| Q |
1 |
ttctacacttctgatccggttgtaggttatacagactatccctttcttgaatgaagaaaacaatgttgtattgtagcatccaaggttgga |
90 |
Q |
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| T |
1044524 |
ttctacatttctgatccggttgttggttacactgactatccctttcttgaatgaagaaaacaatgttgtattgcagcatccaagggtgga |
1044613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 1066139 - 1066197
Alignment:
| Q |
1 |
ttctacacttctgatccggttgtaggttatacagactatccctttcttgaatgaagaaa |
59 |
Q |
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| T |
1066139 |
ttctacatttctgatccagttctaggttatactgactacccctttcttgaatgaagaaa |
1066197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 1059047 - 1059116
Alignment:
| Q |
1 |
ttctacacttctgatccggttgtaggttatacagactatccctttcttgaatgaagaaaacaatgttgta |
70 |
Q |
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| T |
1059047 |
ttctacacttcagatccagttataggttatactgactacccttttcttgaatgaagaaaccagtgttgta |
1059116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 1640419 - 1640371
Alignment:
| Q |
1 |
ttctacacttctgatccggttgtaggttatacagactatccctttcttg |
49 |
Q |
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| T |
1640419 |
ttctacacatctgatccggttctcggttatacagactacccttttcttg |
1640371 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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