View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12898_high_4 (Length: 516)
Name: NF12898_high_4
Description: NF12898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12898_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 454; Significance: 0; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 454; E-Value: 0
Query Start/End: Original strand, 17 - 509
Target Start/End: Complemental strand, 25540501 - 25539996
Alignment:
| Q |
17 |
acaagtaacgttcctcagtgaaattggttactgatgcgttagctgattactcatattttaccatttgctcctacaattttcagattttaagatttattaa |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25540501 |
acaagtaacgttcctcagtgaaattggttactgatgcgttagctgattactcatattttaccatttgctcctacaattttcagattttaagatttattaa |
25540402 |
T |
|
| Q |
117 |
gttttttatgatgttggctccttttctataatatcagtaaggattttatgcttacga-------------taatacggttgtttgttattacatttgatt |
203 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
25540401 |
gttttttatgatgttggctccttttctataatatcagtaaggattttatgcttacgagttataatgtatataatacggttgtttgttattacatttgatt |
25540302 |
T |
|
| Q |
204 |
ttgatataacggatttgtagctagtgcagcttatgaactcttggtataagcactctttttgtatgaagggcctatttggattgactagttttgggcgtat |
303 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25540301 |
ttgatataacggatttgtagctagtgcagcttatgaactcttggtataagcactctttttgtatgaagggcctatttggattgactagttttgggcgtat |
25540202 |
T |
|
| Q |
304 |
gtgggctcttttggtatatgcactttatagggctgtttgggtgagagtatcacaagagcttatgagctcccataagttgtttgtcataagctctcctaac |
403 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
25540201 |
gtgggctcttttggtatatgcactttatagggctgtttgggtgagagtatcacaagagcttatgagctcccataagttgtttgtcataagctctcttaac |
25540102 |
T |
|
| Q |
404 |
aagcttatgaatttgggcttatgcagttcctcggcttatgaccctaaccgcaaacctctttgtcatatcgctagtgctgttcctctcgtcgtacccctct |
503 |
Q |
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| T |
25540101 |
aagcttatgaatttgggcttatgcagttcctcggcttatgaccctaaccgcaaacctctttgtcatatcgctagtgctgttcctctcgtcgtacccctct |
25540002 |
T |
|
| Q |
504 |
ctgctc |
509 |
Q |
| |
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||||| |
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| T |
25540001 |
ttgctc |
25539996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 173 - 418
Target Start/End: Original strand, 25517261 - 25517494
Alignment:
| Q |
173 |
ataatacggttgtttgttattacatttgattttgatataacggatttgtagctagtgcagcttatgaactcttggtataagcactctttttgtatgaagg |
272 |
Q |
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|||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25517261 |
ataatacggttgcttgttattacatttgattttgatataaaggatttgtagctagtgcagcttatgaactcttggtataagcactctttttgtatgaagg |
25517360 |
T |
|
| Q |
273 |
gcctatttggattgactagttttgggcgtatgtgggctcttttggtatatgcactttatagggctgtttgggtgagagtatcacaagagcttatgagctc |
372 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| |
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| T |
25517361 |
gcctatttggattgactagttttgggcgta------------tggtatatgcactttatagaggtgtttgggtgagagtatcacaagagcttatgagctc |
25517448 |
T |
|
| Q |
373 |
ccataagttgtttgtcataagctctcctaacaagcttatgaatttg |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25517449 |
ccataagttgtttgtcataagctctcctaacaagcttatgaatttg |
25517494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 21 - 171
Target Start/End: Complemental strand, 25524962 - 25524812
Alignment:
| Q |
21 |
gtaacgttcctcagtgaaattggttactgatgcgttagctgattactcatattttaccatttgctcctacaattttcagattttaagatttattaagttt |
120 |
Q |
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||||| ||||||||||||||||||| ||||||||| ||||||||| ||| ||||||||| ||||||| ||||||||||||||| | |||||||||||| |
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| T |
25524962 |
gtaacattcctcagtgaaattggttgatgatgcgttgactgattactaataatttaccattcgctcctataattttcagattttatggtttattaagttt |
25524863 |
T |
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| Q |
121 |
tttatgatgttggctccttttctataatatcagtaaggattttatgcttac |
171 |
Q |
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||| ||||||||||||||||||||||||||||| || ||||| ||| |||| |
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| T |
25524862 |
tttctgatgttggctccttttctataatatcagcaacgatttcatgtttac |
25524812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 21 - 136
Target Start/End: Original strand, 25517136 - 25517251
Alignment:
| Q |
21 |
gtaacgttcctcagtgaaattggttactgatgcgttagctgattactcatattttaccatttgctcctacaattttcagattttaagatttattaagttt |
120 |
Q |
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||||||||||||||||||||||| | ||||| ||||||||||||||||||||||||||||| |||||||||||||||| |||||| | |||||||||||| |
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| T |
25517136 |
gtaacgttcctcagtgaaattggctgctgatacgttagctgattactcatattttaccattcgctcctacaattttcaaattttatggtttattaagttt |
25517235 |
T |
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| Q |
121 |
tttatgatgttggctc |
136 |
Q |
| |
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||| |||||||||||| |
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| T |
25517236 |
tttctgatgttggctc |
25517251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 173 - 333
Target Start/End: Complemental strand, 25524762 - 25524598
Alignment:
| Q |
173 |
ataatacggttgtttgttattacatttgattttgatataacggatttgtagctagtgcagcttatgaactcttggtataagca----ctctttttgtatg |
268 |
Q |
| |
|
|||||||||||| || ||||||||||||||||||||| || ||| ||||||||||| |||||||||| ||| ||||||||| |||| |||||||| |
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| T |
25524762 |
ataatacggttgcttcttattacatttgattttgatacaaaggaattgtagctagtagagcttatgaattctccgtataagcaagcactctgtttgtatg |
25524663 |
T |
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| Q |
269 |
aagggcctatttggattgactagttttgggcgtatgtgggctcttttggtatatgcactttatag |
333 |
Q |
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|| ||||| |||||||| |||| ||||||| |||| ||||||||||||||||||||||||||||| |
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| T |
25524662 |
aaaggcctctttggatttactaattttgggagtatctgggctcttttggtatatgcactttatag |
25524598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 465 - 512
Target Start/End: Original strand, 25517537 - 25517584
Alignment:
| Q |
465 |
gtcatatcgctagtgctgttcctctcgtcgtacccctctctgctcctc |
512 |
Q |
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|||||||| ||||||||||||||||| || ||||||||| |||||||| |
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| T |
25517537 |
gtcatatccctagtgctgttcctctcttcatacccctctttgctcctc |
25517584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 192 - 244
Target Start/End: Complemental strand, 25537244 - 25537194
Alignment:
| Q |
192 |
ttacatttgattttgatataacggatttgtagctagtgcagcttatgaactct |
244 |
Q |
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||||||||||||||||||| | |||| |||||||||||| |||||||||||| |
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| T |
25537244 |
ttacatttgattttgatatgaaggat--gtagctagtgcatcttatgaactct |
25537194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 366 - 425
Target Start/End: Original strand, 27122674 - 27122733
Alignment:
| Q |
366 |
tgagctcccataagttgtttgtcataagctctcctaacaagcttatgaatttgggcttat |
425 |
Q |
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|||||||||||||| ||||| |||||||||| |||||||||||||| || |||||||||| |
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| T |
27122674 |
tgagctcccataagctgtttttcataagctcccctaacaagcttataaacttgggcttat |
27122733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 357 - 415
Target Start/End: Original strand, 24023997 - 24024055
Alignment:
| Q |
357 |
aagagcttatgagctcccataagttgtttgtcataagctctcctaacaagcttatgaat |
415 |
Q |
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||||||||||||||||||||||| ||||| | ||||||||||| |||||||||||| |
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| T |
24023997 |
aagagcttatgagctcccataagctgttttcaacgagctctcctaataagcttatgaat |
24024055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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