View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12898_low_1 (Length: 818)
Name: NF12898_low_1
Description: NF12898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12898_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 606; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 606; E-Value: 0
Query Start/End: Original strand, 127 - 767
Target Start/End: Original strand, 44692796 - 44693437
Alignment:
| Q |
127 |
gcggtggaatcttcgtaggaggaatgccctccccccggaggtttcggttagatgtgtgttgtgcgaggaggaaatggaaagatctaatcacctttttgtg |
226 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
44692796 |
gcggtggaatcttcgtagaaggaatgccctccccccggaggtttcggttagatgtgtgttgtgcgaggaggaaatggaaatatctaatcacctttttgtg |
44692895 |
T |
|
| Q |
227 |
cattgtccggtggctagagggatttggttggagcttctcaagtgggttgatagtatgtttataatgccgcaaagtgtttttaatcattggttctgttgga |
326 |
Q |
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| T |
44692896 |
cattgtccggtggctagagggatttggttggagcttctcaagtgggttgatagtatgtttataatgccgcaaagtgtttttaatcattggctctgttgga |
44692995 |
T |
|
| Q |
327 |
atgcgggagcctctaataagaagatgattaagggatttagactcatttggcacgcgacaatttgggtgatttggaaagcgagaaatgataagatatttaa |
426 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44692996 |
atgcgggagcctctaataagaagatgattaagggatttagactcatttggcacgcgacaatttgggtgatttggaaagcgagaaatgataagatatttaa |
44693095 |
T |
|
| Q |
427 |
tgacaaggtgaaggaagtgttggaaatcattga-gaggttaaagttttatcgtggaggtggtgcctatcccgccttaatataccggcctgcctttattat |
525 |
Q |
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|||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| |
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| T |
44693096 |
tgacaaggtgaaggaagtgttggaaatcgttgaggaggttaaagttttatcgtggaggtggtgcctatccagccttaagataccggcctgcctttattat |
44693195 |
T |
|
| Q |
526 |
gagtgaagttggaatccgaagttgtgtctattgagatagttgtttttgtgctgtttggtttgtctgctgaaggtatcgttttctgtctggttttccttcg |
625 |
Q |
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| T |
44693196 |
gagtgaagttggaatccgaagttgtgtctattgagatagttgtttttgtgctgtttggtttgtctgctgaaggtatcgttttctgtctggttttccttcg |
44693295 |
T |
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| Q |
626 |
ctggttgtctggttttcggggttgattccgtctcagtggtgctggatgttctgtgctggtttttgcctcctgttatgttgcagtttggctggtggctgct |
725 |
Q |
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| T |
44693296 |
ctagttgtctggttttcggggttgattccgtctcagtggtgctggatgttctgtgctggtttttgcctcctgttatgttgcagtttggctggtggctgct |
44693395 |
T |
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| Q |
726 |
gtcagtttttgggctggtgtgttctgtgcagttagcagctgt |
767 |
Q |
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| T |
44693396 |
gtcagtttttgggctggtgtgttctgtgcagttagcagctgt |
44693437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 18 - 133
Target Start/End: Original strand, 44692643 - 44692758
Alignment:
| Q |
18 |
aaatctatgtatggggaagcttgaaggtagctggattgtggagaataggtggagtgtggaggagttgggagttttttctcaactttggaaaagcccggct |
117 |
Q |
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| T |
44692643 |
aaatctatgtatggggaagcttgaaggtagctggattgtggagaataggtggagtgtggaggagttgggagttttttctcaactttggaaaagcccggct |
44692742 |
T |
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| Q |
118 |
ccgtcaaaagcggtgg |
133 |
Q |
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|||||||||| ||||| |
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| T |
44692743 |
ccgtcaaaagtggtgg |
44692758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 108; Significance: 8e-54; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 108; E-Value: 8e-54
Query Start/End: Original strand, 152 - 451
Target Start/End: Complemental strand, 34866371 - 34866072
Alignment:
| Q |
152 |
gccctccccccggaggtttcggttagatgtgtgttgtgcgaggaggaaatggaaagatctaatcacctttttgtgcattgtccggtggctagagggattt |
251 |
Q |
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||||| || |||||||| ||||| || |||| || ||||||| || | ||||| ||| | |||||| || | ||||||| ||||||||||||||||| |
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| T |
34866371 |
gcccttcctccggaggtctcggtgaggtgtgctttatgcgaggttgagacggaaacatccattcacctcttcgcgcattgtatggtggctagagggattt |
34866272 |
T |
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| Q |
252 |
ggttggagcttctcaagtgggttgatagtatgtttataatgccgcaaagtgtttttaatcattggttctgttggaatgcgggagcctctaataagaagat |
351 |
Q |
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|||| || || || ||||||||||||| ||||||| | ||||| |||| |||||||||||||||||| |||||||||||||| |||||||||||||| | |
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| T |
34866271 |
ggttagaactccttaagtgggttgataatatgtttttgatgcctcaaaatgtttttaatcattggttgtgttggaatgcgggtgcctctaataagaaatt |
34866172 |
T |
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| Q |
352 |
gattaagggatttagactcatttggcacgcgacaatttgggtgatttggaaagcgagaaatgataagatatttaatgacaaggtgaaggaagtgttggaa |
451 |
Q |
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||||||||| ||||||||||||||||| || |||||||||| |||||||| ||| ||||||||||| ||||| ||||||| ||| || ||| ||||| |
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| T |
34866171 |
gattaagggttttagactcatttggcatgccgcaatttgggttatttggaagatgaggaatgataagatttttaacgacaaggagaaagaggtgatggaa |
34866072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 18 - 133
Target Start/End: Complemental strand, 34866548 - 34866434
Alignment:
| Q |
18 |
aaatctatgtatggggaagcttgaaggtagctggattgtggagaataggtggagtgtggaggagttgggagttttttctcaactttggaaaagcccggct |
117 |
Q |
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||||||||||||| | ||| ||||||| || |||||||||||||| | |||||||||||||||||| |||| ||| |||||||||||||||||||| |
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| T |
34866548 |
aaatctatgtatgcg-aagtttgaagggagatggattgtggagaacaattggagtgtggaggagttgagagtgtttctccaactttggaaaagcccggcc |
34866450 |
T |
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| Q |
118 |
ccgtcaaaagcggtgg |
133 |
Q |
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|| ||||||| ||||| |
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| T |
34866449 |
ccctcaaaagtggtgg |
34866434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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