View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12898_low_10 (Length: 414)
Name: NF12898_low_10
Description: NF12898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12898_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 264; Significance: 1e-147; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 113 - 405
Target Start/End: Complemental strand, 48092358 - 48092056
Alignment:
| Q |
113 |
ccatgattgatactactaaccaattatttatataatttgaccgtgaaataaatcaaatcaaat----------aatggatcacatgcaatgaaaaagaga |
202 |
Q |
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| T |
48092358 |
ccatgattgatactactaaccaattatttatataatttgaccgtgaaataaatcaaatcaaatcaaatcaaataatggatcacatgctatgaaaaagaga |
48092259 |
T |
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| Q |
203 |
gtaatttaccctcaaaatcttcttatattcagatattatatatctgacataatccggtaaattgtattggcgtgatcttgcagagaatggcactaagtaa |
302 |
Q |
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| T |
48092258 |
gtaatttaccctcaaaatcttcttatattcagatattatatatctgacataatccggtaaattgtattggcgtgatcttgcagagaatggcactaagtaa |
48092159 |
T |
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| Q |
303 |
tagttattcacaaaatcatttcctccaagagtgatgagtactaatgctccattcactaagctctgagtttgttcaggtccaataagaccactcactctct |
402 |
Q |
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| T |
48092158 |
tagttattcacaaaatcatttcctccaagagtgatgagtactaatgctccattcactaagctctgagtttgttcaggtccaataagaccactcactctct |
48092059 |
T |
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| Q |
403 |
gct |
405 |
Q |
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| T |
48092058 |
gct |
48092056 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 48092429 - 48092352
Alignment:
| Q |
1 |
cattacatcatgtcactttttatccaatcttatgtttgatacaaaatttatctgacttctacgccatatatccatgat |
78 |
Q |
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| T |
48092429 |
cattacatcatgtcactttttatccaatcttatgtttgatacaaaatttatctgacttctacgccatatatccatgat |
48092352 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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