View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12898_low_12 (Length: 412)
Name: NF12898_low_12
Description: NF12898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12898_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 268; Significance: 1e-149; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 1 - 303
Target Start/End: Complemental strand, 503457 - 503154
Alignment:
| Q |
1 |
cttattattaatatcatgaacttgaatcattgaaaggccattcactttcctgtcgacccaacgctgagatcctttcctggagaggctcctctgcaaccct |
100 |
Q |
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| T |
503457 |
cttattattaatatcatgaacttgaagcattgaaaggccattcactttcctgtcgaccccacgctgagatcctttcctggagaggctcctctgcaaccct |
503358 |
T |
|
| Q |
101 |
ttctggtcagaatactattaatatattaacataatgacgacattaaaatgtgaaacccttaaactaataaacgaagaagacaacaggaagttggcccat- |
199 |
Q |
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| T |
503357 |
ttctggtcagaatactattaatatattaacataatgacgacattaaaatgtgaaacccttaaactaataaacgaagaagacaacaggaagttggcccatt |
503258 |
T |
|
| Q |
200 |
---tttgcatgcaaattttgagctgaatataaaagtaggaggggaaggatatttagattatcattatccagtcttttaaggtttcgttgaggtttttcgt |
296 |
Q |
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| T |
503257 |
ttatttgcatgcaaattttgagctgaatataaaagtaggaggggaagga---ttagattatcattatccagtcttttaaggtttcgttgaggtttttcgt |
503161 |
T |
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| Q |
297 |
aacgata |
303 |
Q |
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||||||| |
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| T |
503160 |
aacgata |
503154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 353 - 393
Target Start/End: Complemental strand, 503155 - 503115
Alignment:
| Q |
353 |
tatgaatggtgaagaatgtgtgtgtattctacaacgactat |
393 |
Q |
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| T |
503155 |
tatgaatggtgaagaatgtgtgtgtattatataacgactat |
503115 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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