View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12898_low_13 (Length: 393)
Name: NF12898_low_13
Description: NF12898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12898_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 339; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 1 - 376
Target Start/End: Complemental strand, 33862196 - 33861820
Alignment:
| Q |
1 |
cttgaggagaagcaaagtccaaaactccaaaccgctaggccaacccaaatgggttatcatgcaaaagtcattatgtaaccataattagattttctagaat |
100 |
Q |
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| T |
33862196 |
cttgaggaggagcaaagtccaaaactccaaaccactaggccaacccaaatgggttatcatgcaaaagtcattatgtaaccataattagattttctagaat |
33862097 |
T |
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| Q |
101 |
caaaatcacccgctgtatctgcatctttgtagctaattaatacagatcccccaccccactaagatatctgagaaac--tttcaaatcttgttgatgatct |
198 |
Q |
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| T |
33862096 |
caaaatcacccgctgtatctgcatctttgtagctaattaatacagatccaccaccccactaagatatctgagaaactatttcaaatcttgtcgatgatct |
33861997 |
T |
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| Q |
199 |
ttgccatgattagagagaaattaattgacaactccaacaatatgagcaatatacggccttgtgcatgccttaacatacacaaagctatctttgtggatgc |
298 |
Q |
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| T |
33861996 |
ttgccatgattagagagaaattaattgacaactccaacaatatgagcaatatacggccttgtgcatgccttaacatacacaaaactatc-ttgtggatgc |
33861898 |
T |
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| Q |
299 |
atatggaaccatctctatatcttcttgatcttttcacttgtagggcattattctgaactcaatttgaaatgactatag |
376 |
Q |
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| T |
33861897 |
atatggaaccatctctatatcttcttgatcttttcacttgtagggcattattctgaactcaatttgaaatgactatag |
33861820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 1 - 376
Target Start/End: Original strand, 33918726 - 33919102
Alignment:
| Q |
1 |
cttgaggagaagcaaagtccaaaactccaaaccgctaggccaacccaaatgggttatcatgcaaaagtcattatgtaaccataattagattttctagaat |
100 |
Q |
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||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33918726 |
cttgaggaggagcaaagtccaaaactccaaaccactaggccaacccaaatgggttatcatgcaaaagtcattatgtaaccataattagattttctagaat |
33918825 |
T |
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| Q |
101 |
caaaatcacccgctgtatctgcatctttgtagctaattaatacagatcccccaccccactaagatatctgagaaac--tttcaaatcttgttgatgatct |
198 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| |||||||| |
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| T |
33918826 |
caaaatcacccgctgtatctgcatctttgtagctaattaatacagatccaccaccccactaagatatctgagaaactatttcaaatcttgtcgatgatct |
33918925 |
T |
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| Q |
199 |
ttgccatgattagagagaaattaattgacaactccaacaatatgagcaatatacggccttgtgcatgccttaacatacacaaagctatctttgtggatgc |
298 |
Q |
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| T |
33918926 |
ttgccatgattagagagaaattaattgacaactccaacaatatgagcaatatacggccttgtgcatgccttaacatacacaaaactatc-ttgtggatgc |
33919024 |
T |
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| Q |
299 |
atatggaaccatctctatatcttcttgatcttttcacttgtagggcattattctgaactcaatttgaaatgactatag |
376 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33919025 |
atatggaaccatctctatatcttcttgatcttttcacttgtagggcattattctgaactcaatttgaaatgactatag |
33919102 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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