View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12898_low_16 (Length: 334)
Name: NF12898_low_16
Description: NF12898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12898_low_16 |
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Alignment Details
Target: chr7 (Bit Score: 263; Significance: 1e-146; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 48 - 322
Target Start/End: Complemental strand, 39946236 - 39945962
Alignment:
| Q |
48 |
cagaggagtttcagaaaggatatcctcaacacatcatgcttaaattgattggagttgggcatatgccaatgtagtttttggttcatgaaagtgttgtgta |
147 |
Q |
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| T |
39946236 |
cagaggagtttcagaaaggatatcctcaacacatcatgcttaaattgattggagttgggcatatgccaatgtagtttttggttcatgaaagtgttgtgta |
39946137 |
T |
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| Q |
148 |
gactgtaggcaaccttttctacttttaacttagatcatcactctgaatgtgatttctaaaagggctttagtatactttcctcgtctttgtgttataatgg |
247 |
Q |
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| T |
39946136 |
gcctgtaggcaaccttttctacttttaacttagatcatcactctgaatgtgatttctaaaagggttttagtatactttcctcgtctttgtgttataatgg |
39946037 |
T |
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| Q |
248 |
tgcaagtatttctcatgtaggttactgatttcaatctcctgtatcaacttatgttatcaccttgttcgtggccta |
322 |
Q |
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| T |
39946036 |
tgcaagtatttctcatgtaggttactgatttcaatctcctgtatcaacttattttatcaccttgttcgtggccta |
39945962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 16 - 49
Target Start/End: Complemental strand, 39946335 - 39946302
Alignment:
| Q |
16 |
cattttattggttttagttgatgccatgttaaca |
49 |
Q |
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| T |
39946335 |
cattttattggttttagttgatgccatgttaaca |
39946302 |
T |
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