View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12898_low_18 (Length: 324)
Name: NF12898_low_18
Description: NF12898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12898_low_18 |
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Alignment Details
Target: chr8 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 4 - 313
Target Start/End: Original strand, 1475072 - 1475381
Alignment:
| Q |
4 |
ctcgttcactgcttgctgcatatcccctttccctggtaagtcactgttttcaagatattgttcttaacagtcaacatgttgctagttatgtaaatgttta |
103 |
Q |
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| T |
1475072 |
ctcgtgcactgcttgctgcatatcccctttccctggtaagtcactgttttcaagatattgttcttaacagtcaacatgttgctagttatgtaaatgttta |
1475171 |
T |
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| Q |
104 |
atttatatggtggctcattctacttccagtgaactgattaatacgacatcttttgtgcattcttcccaaccccaaacttaaagtttaatatttttcctgt |
203 |
Q |
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| T |
1475172 |
atttatatggtggctcattctacttccagtgaactgattaatacgacatcttttgtgcattcttcccaaccccaaacttaaagtttaatatttttcctgt |
1475271 |
T |
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| Q |
204 |
atttatgtttaaactatgaattaatgtggtgaataaagtttcattaagttcaatattttctgactcctacatagttcaatattttctctatattatgatg |
303 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1475272 |
atttatgtttaaactatgaattaatgtggtgaataaagtttcattaagttcaatattttctgactcctacatagttcaatattttctctatattatgatg |
1475371 |
T |
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| Q |
304 |
aaattgatgt |
313 |
Q |
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|||||||||| |
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| T |
1475372 |
aaattgatgt |
1475381 |
T |
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