View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12898_low_24 (Length: 260)
Name: NF12898_low_24
Description: NF12898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12898_low_24 |
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Alignment Details
Target: chr8 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 18 - 245
Target Start/End: Original strand, 34727605 - 34727831
Alignment:
| Q |
18 |
gaaactacttataaaccgcatcaatgattcagaaaatgcacaaagaatatacatatatgtatacagtagagaaatcttaaaaaacatctaaaaagtgtga |
117 |
Q |
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| T |
34727605 |
gaaactacttataaaccgcatcaatgattcagaaaatgcacaaagaatatacatatatgtatacagtagagaaatcttaaaaaacatctaaaa-gtgtga |
34727703 |
T |
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| Q |
118 |
accttttcatttannnnnnnnnaaataatcaacaccattattacttgccaaggcaagaaaaatggattaatcatacaaaaacaacttgtactcaactcaa |
217 |
Q |
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| T |
34727704 |
accttttcatttatttttttaaaaataatcaacaccattattacttgccaaggcaagaaaaatggattaatcatacaaaaacaacttgtactcaactcaa |
34727803 |
T |
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| Q |
218 |
cagttagtgattgctattgaatcaaatg |
245 |
Q |
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| T |
34727804 |
cagttagtgattgctattgaatcaaatg |
34727831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 207 - 243
Target Start/End: Original strand, 34732319 - 34732355
Alignment:
| Q |
207 |
actcaactcaacagttagtgattgctattgaatcaaa |
243 |
Q |
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| T |
34732319 |
actcaactcaacagttagtgattgttattgaatcaaa |
34732355 |
T |
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