View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12898_low_26 (Length: 249)
Name: NF12898_low_26
Description: NF12898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12898_low_26 |
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Alignment Details
Target: chr8 (Bit Score: 208; Significance: 1e-114; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 34727538 - 34727292
Alignment:
| Q |
1 |
caacattacattgataatctcatttggcttatactttgcagattagattacctaatttctaagcttttct-----gatggacttgaatgcaatatctc-- |
93 |
Q |
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| T |
34727538 |
caacattacattgataatctcatttggcttatactttgcagattagattacctaatttctaagcttttcttttctgatggacttgaatgcaatatctccc |
34727439 |
T |
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| Q |
94 |
tcttcacagtgggaatgggatcacctaccattactcgatacaaaagcaactaaaaaccaaaaattacaaccaccaaactggactatggaacttgaccgag |
193 |
Q |
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| T |
34727438 |
tcttcacagtgggaatgggatcacctaccattactcgatacaaaagcaactgaaaaccaaaaattacaaccaccaaactggactatggaacttgacccag |
34727339 |
T |
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| Q |
194 |
aaatcaatttcgggttgtatgatacgcccgttggaagtggttcttct |
240 |
Q |
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| T |
34727338 |
aaatcaatttcgggttgtatgatacgcccgttggaagtggttcttct |
34727292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 34731769 - 34731533
Alignment:
| Q |
1 |
caacatta-cattgataatctcatttggcttatactttgcagattagattacctaatttctaagcttttctgatggacttgaatgcaatatct--ctctt |
97 |
Q |
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| T |
34731769 |
caacattagcattgataatctcatttggtttatactttgcagattagattacctaatttctaagcttttctgatggacttgaatgcaatatctccctctt |
34731670 |
T |
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| Q |
98 |
cacagtgggaatgggatcacctaccattactcgatacaaaagcaactaaaaaccaaaaattacaaccaccaaactggactatggaacttgaccgagaaat |
197 |
Q |
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| T |
34731669 |
cccagtgggactgggagcaccaatcattcttcaatgcaaaagcaactgaatatccaaaattacaaccaccaagctggagtatcgaacaagaccgagaaat |
34731570 |
T |
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| Q |
198 |
caatttcgggttgtatgatacgcccgttggaagtggt |
234 |
Q |
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| T |
34731569 |
caatgtcgggttgttcgatacacccggtggaagtggt |
34731533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 16 - 240
Target Start/End: Complemental strand, 34722477 - 34722251
Alignment:
| Q |
16 |
aatctcatttggcttatactttgcagattagattacctaatttctaagcttttctgatggacttgaatgcaatatctc--tcttcacagtgggaatggga |
113 |
Q |
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| T |
34722477 |
aatctcatttgattttaactttgcagattagattccctaacttctgagcttttctgatggatttgaatgcaaaatctccctcttcacagtgggaatggga |
34722378 |
T |
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| Q |
114 |
tcacctaccattactcgatacaaaagcaactaaaaaccaaaaattacaaccaccaaactggactatggaacttgaccgagaaatcaatttcgggttgtat |
213 |
Q |
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| T |
34722377 |
tcacctaccattaccggatacaaaagctactgaaaataaaaaattacaaccaccaaactggagtatcaaattagaccgagaaaataatgtctggttgttc |
34722278 |
T |
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| Q |
214 |
gatacgcccgttggaagtggttcttct |
240 |
Q |
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| T |
34722277 |
gatacgccaactggaagtggttattct |
34722251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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