View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12898_low_27 (Length: 241)
Name: NF12898_low_27
Description: NF12898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12898_low_27 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 201; Significance: 1e-110; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 9 - 225
Target Start/End: Original strand, 41917940 - 41918156
Alignment:
| Q |
9 |
agcaaaggaaaagttatgttagaaagaccgccaacactcatgaaaacaacactccaaaaccttcaactccgaagcagagaaaaagttatgttagaaagac |
108 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |
|
|
| T |
41917940 |
agcagaggaaaagttatgttagaaagaccgccaacactcatgacaacaacactccaaaaccttcaactccgaaacagaggaaaagttatgttagaaagac |
41918039 |
T |
|
| Q |
109 |
tgccaagattcctgagtgtcaaaagccattatttgtcgatgatggagattccatctctttcccatttttggaatatttcaaagattcaaaggtttatcag |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41918040 |
tgccaagattcctgagtgtcaaaagccattatttgtcgatgatggagattccatctctttcccatttttggaatatttcaaagattcaaaggtttatcag |
41918139 |
T |
|
| Q |
209 |
ggtggatttgaaaattc |
225 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
41918140 |
ggtggatttgaaaattc |
41918156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 58 - 114
Target Start/End: Original strand, 41917917 - 41917973
Alignment:
| Q |
58 |
cactccaaaaccttcaactccgaagcagagaaaaagttatgttagaaagactgccaa |
114 |
Q |
| |
|
|||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||| |
|
|
| T |
41917917 |
cactccaaaaccatcaactccgaagcagaggaaaagttatgttagaaagaccgccaa |
41917973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 56 - 178
Target Start/End: Original strand, 1686863 - 1686985
Alignment:
| Q |
56 |
aacactccaaaaccttcaactccgaagcagagaaaaagttatgttagaaagactgccaagattcctgagtgtcaaaagccattatttgtcgatgatggag |
155 |
Q |
| |
|
|||||||| |||||| ||||||||||||||| ||||||||||||||||||| ||| |||| | |||||||||| ||||||||||| ||||||||| |
|
|
| T |
1686863 |
aacactcccaaacctgtaactccgaagcagaggaaaagttatgttagaaagagtgctaagacttgtgagtgtcaacgaccattatttgttgatgatggaa |
1686962 |
T |
|
| Q |
156 |
attccatctctttcccatttttg |
178 |
Q |
| |
|
||||||||||||| ||||||||| |
|
|
| T |
1686963 |
attccatctctttaccatttttg |
1686985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University