View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12898_low_29 (Length: 240)
Name: NF12898_low_29
Description: NF12898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12898_low_29 |
 | |
|
| [»] chr5 (2 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 186; Significance: 1e-101; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 18 - 240
Target Start/End: Original strand, 1906811 - 1907045
Alignment:
| Q |
18 |
atgatacccaataaaaattcattattttgttacatcactctacttttattactacattttaaaaaatataacgcgtcaaaggaaaacgaacgtcttct-- |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
1906811 |
atgatacccaataaaaattcattattttgttacatcactctacttttattactacattttaaaaaatataacgcgtcaaaggaaaacaaacgtcttctag |
1906910 |
T |
|
| Q |
116 |
----------gtaaaactaacttactcggacaatatatagacaaagatcctctacctttagggagggaaagtcgtctatctttctttcatcttttatttt |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1906911 |
ttatgtcattgtaaaactaacttactcggacaatatatagacaaagatcctctaccttcagggagggaaagtcgtctatctttctttcatcttttatttt |
1907010 |
T |
|
| Q |
206 |
ctctcacatcttttcgctcaatatttctccatatt |
240 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
1907011 |
ctctcacatcttttcgctcaatatttctccatatt |
1907045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 192 - 220
Target Start/End: Complemental strand, 12201141 - 12201113
Alignment:
| Q |
192 |
tcatcttttattttctctcacatcttttc |
220 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
12201141 |
tcatcttttattttctctcacatcttttc |
12201113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University