View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12898_low_3 (Length: 517)

Name: NF12898_low_3
Description: NF12898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12898_low_3
NF12898_low_3
[»] chr5 (3 HSPs)
chr5 (153-354)||(1917592-1917793)
chr5 (8-88)||(1917858-1917938)
chr5 (420-502)||(1917444-1917526)
[»] chr1 (2 HSPs)
chr1 (195-351)||(29120805-29120963)
chr1 (425-502)||(29121038-29121115)
[»] chr6 (1 HSPs)
chr6 (8-88)||(32252551-32252631)
[»] chr8 (2 HSPs)
chr8 (8-88)||(44516194-44516282)
chr8 (174-251)||(44515990-44516069)


Alignment Details
Target: chr5 (Bit Score: 198; Significance: 1e-107; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 153 - 354
Target Start/End: Complemental strand, 1917793 - 1917592
Alignment:
Q  153 ggctctacccaagagatatctaaaataaaccaccaccactgatatgacagagaaacaaaagtatatcacagcagcttcataagcgatgctccaacctgtc 252  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1917793 ggctctacccaagagatatctaaaataaaccaccaccactgatatgacagagaaacaaaagtatatcacagcagcttcataagcgatgctccaacctgtc 1917694  T
Q  253 ttcttcgataaaacgcaccgaaagctactcaaacccaatctgtctaaataacgatcaactgaactgccaaaaaatctcaggaaccacagtttagatcacg 352  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  1917693 ttcttcgataaaacgcaccgaaagctactcaaacccaatctgtctaaataacgatcagctgaactgccaaaaaatctcaggaaccacagtttagatcacg 1917594  T
Q  353 ac 354  Q
    ||    
T  1917593 ac 1917592  T

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Target: chr5; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 8 - 88
Target Start/End: Complemental strand, 1917938 - 1917858
Alignment:
Q  8 gagcagagacaaatattattgcattgaaacacaacacaagtacaagatatactctgtgtgtgaaaatagatacaggaagtg 88  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1917938 gagcaaagacaaatattattgcattgaaacacaacacaagtacaagatatactctgtgtgtgaaaatagatacaggaagtg 1917858  T

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Target: chr5; HSP #3
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 420 - 502
Target Start/End: Complemental strand, 1917526 - 1917444
Alignment:
Q  420 gagacggacacctatacttctactcatgcagacaaggatcagaaacaccaaaacaacaatgctgaaagttcaagtcttcatat 502  Q
    ||||||||||||| ||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  1917526 gagacggacacctgtacttctactcatacagacaaggatcagaaacaccaagacaacaatgctgaaagttcaagtcttcatat 1917444  T

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Target: chr1 (Bit Score: 83; Significance: 4e-39; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 195 - 351
Target Start/End: Original strand, 29120805 - 29120963
Alignment:
Q  195 tatgacagagaaacaaaag-tatatcacagcagcttcataagcgatgctccaacctgtcttcttcgataaaacgcaccgaaagctactcaaacccaatct 293  Q
    ||||||||||||||||||  ||||||||| ||||| ||||||||||||||  ||||||||||||||||||||| |||| |||||||||||||||||||||    
T  29120805 tatgacagagaaacaaaaaatatatcacaacagctccataagcgatgctctgacctgtcttcttcgataaaacacaccaaaagctactcaaacccaatct 29120904  T
Q  294 gtctaaataacgatcaactgaactgccaa-aaaatctcaggaaccacagtttagatcac 351  Q
    | ||||| ||||| || ||||||||| || |||||||||  |||||||||||| |||||    
T  29120905 gactaaaaaacgaacagctgaactgcaaataaaatctcaaaaaccacagtttaaatcac 29120963  T

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Target: chr1; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 425 - 502
Target Start/End: Original strand, 29121038 - 29121115
Alignment:
Q  425 ggacacctatacttctactcatgcagacaaggatcagaaacaccaaaacaacaatgctgaaagttcaagtcttcatat 502  Q
    |||||||| ||||||| ||||  ||||||||||||||||||||||| ||||||||||||||| |||||||||||||||    
T  29121038 ggacacctgtacttctgctcaaacagacaaggatcagaaacaccaagacaacaatgctgaaaattcaagtcttcatat 29121115  T

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Target: chr6 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 8 - 88
Target Start/End: Complemental strand, 32252631 - 32252551
Alignment:
Q  8 gagcagagacaaatattattgcattgaaacacaacacaagtacaagatatactctgtgtgtgaaaatagatacaggaagtg 88  Q
    ||||| ||||||||||||||||||| ||||||||||||| |||||  |||||| ||||||||||||||||||||| |||||    
T  32252631 gagcaaagacaaatattattgcattaaaacacaacacaaatacaatgtatactttgtgtgtgaaaatagatacagaaagtg 32252551  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 8 - 88
Target Start/End: Complemental strand, 44516282 - 44516194
Alignment:
Q  8 gagcagagacaaatattattgcattgaaacacaacacaagtacaaga--------tatactctgtgtgtgaaaatagatacaggaagtg 88  Q
    ||||| |||||||| |||||| ||||||||||||||||||||||||         |||||| |||||||||||||||||||||||||||    
T  44516282 gagcaaagacaaattttattgaattgaaacacaacacaagtacaagtgtacaaggtatactttgtgtgtgaaaatagatacaggaagtg 44516194  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 174 - 251
Target Start/End: Complemental strand, 44516069 - 44515990
Alignment:
Q  174 aaaataaaccaccaccactgatatgacagagaaac--aaaagtatatcacagcagcttcataagcgatgctccaacctgt 251  Q
    ||||||||||||||||||  |||||||||| ||||  |||| |||||||||   ||| ||||||||||||||| ||||||    
T  44516069 aaaataaaccaccaccacaaatatgacagacaaacaaaaaaatatatcacaatggctccataagcgatgctccgacctgt 44515990  T

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