View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12898_low_31 (Length: 235)
Name: NF12898_low_31
Description: NF12898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12898_low_31 |
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Alignment Details
Target: chr4 (Bit Score: 145; Significance: 2e-76; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 19 - 220
Target Start/End: Original strand, 53852460 - 53852668
Alignment:
| Q |
19 |
atatactacttgtatattagtttaaatatttatttgaagaccactgagatcaaactaattaaatttcatggctttcttataaacaaaaataagtctctgt |
118 |
Q |
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| T |
53852460 |
atatactacttgtatattagtttaaatatttatttgaagaccactgagaacaaactaa----atttcatggctttcttataaacaaaaataagtctctgt |
53852555 |
T |
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| Q |
119 |
tcaaataa----------caaataagtcatgtattatgcaccactgagatcttaatcattttcttttctattgtgacatgattttattctcggtggttac |
208 |
Q |
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|||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53852556 |
tcaaataacaaataacatcaaataagtcatgcattatgcaccactgagatcttaatcattttcttttctattgtgacatgattttattctcggtggttac |
53852655 |
T |
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| Q |
209 |
tc-ttaccctttg |
220 |
Q |
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|| |||||||||| |
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| T |
53852656 |
tctttaccctttg |
53852668 |
T |
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