View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12898_low_33 (Length: 229)
Name: NF12898_low_33
Description: NF12898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12898_low_33 |
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Alignment Details
Target: chr7 (Bit Score: 129; Significance: 6e-67; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 15 - 170
Target Start/End: Original strand, 760780 - 760936
Alignment:
| Q |
15 |
gatgaagcagttagtgcgtatcgtgatattgttgtgaagcatcct-atagtgatttccaccttgataatcagatccctattatgataatgactgagctta |
113 |
Q |
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| T |
760780 |
gatgaagcagttagtgcgtatcgtgatattgttatgaagcatcctcatagtgatgttcaccttgataatcaaatccctattatgataatgactgagctta |
760879 |
T |
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| Q |
114 |
taaattctggtatgaatgacaaggctgccactgtttttaccttagccaatgaatctc |
170 |
Q |
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| T |
760880 |
taaattctggtatgaatgacaaggctgccactgtttttaccttagccaatggatctc |
760936 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 15 - 109
Target Start/End: Complemental strand, 704630 - 704534
Alignment:
| Q |
15 |
gatgaagcagttagtgcgtatc-gtgatattgttgtgaagcatcct-atagtgatttccaccttgataatcagatccctattatgataatgactgag |
109 |
Q |
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| T |
704630 |
gatgaagcagttagtgcgtatttgtgatattgttatgaagcatcctcatagtgatgttcaccttgataatcaaatccctattatgataatgactgag |
704534 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 96 - 150
Target Start/End: Complemental strand, 1409009 - 1408955
Alignment:
| Q |
96 |
tgataatgactgagcttataaattctggtatgaatgacaaggctgccactgtttt |
150 |
Q |
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| T |
1409009 |
tgataatgactgagcttataaattctggtatgactgatgaggctgtcactgtttt |
1408955 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 59
Target Start/End: Complemental strand, 1409071 - 1409027
Alignment:
| Q |
15 |
gatgaagcagttagtgcgtatcgtgatattgttgtgaagcatcct |
59 |
Q |
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| T |
1409071 |
gatgaagcagttagtgcgtatcatgatgttgttatgaagtatcct |
1409027 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 15 - 105
Target Start/End: Original strand, 5934925 - 5935016
Alignment:
| Q |
15 |
gatgaagcagttagtgcgtatcgtgatattgttgtgaagcatcct-atagtgatttccaccttgataatcagatccctattatgataatgac |
105 |
Q |
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| T |
5934925 |
gatgaagcagttagtgtctatattgctattgttgtgaagcatcctgatagtgatttccaccttgataatcacatcccttttatgataatgac |
5935016 |
T |
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