View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12898_low_35 (Length: 221)

Name: NF12898_low_35
Description: NF12898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12898_low_35
NF12898_low_35
[»] chr2 (3 HSPs)
chr2 (19-206)||(41362872-41363059)
chr2 (48-107)||(28633762-28633821)
chr2 (14-88)||(44679929-44680003)
[»] chr7 (4 HSPs)
chr7 (14-206)||(23409503-23409695)
chr7 (15-206)||(9954113-9954304)
chr7 (16-55)||(25137057-25137096)
chr7 (16-55)||(30758608-30758647)
[»] chr6 (4 HSPs)
chr6 (14-195)||(35023568-35023749)
chr6 (15-130)||(2879880-2879995)
chr6 (16-130)||(33353944-33354058)
chr6 (16-55)||(28871701-28871740)
[»] chr4 (7 HSPs)
chr4 (14-194)||(46671342-46671522)
chr4 (17-206)||(16420064-16420253)
chr4 (17-206)||(55585154-55585343)
chr4 (14-130)||(53436921-53437036)
chr4 (46-128)||(987397-987479)
chr4 (16-54)||(3216270-3216308)
chr4 (16-55)||(6673614-6673653)
[»] scaffold0434 (1 HSPs)
scaffold0434 (11-205)||(10991-11185)
[»] scaffold0007 (1 HSPs)
scaffold0007 (14-196)||(275481-275663)
[»] scaffold0049 (1 HSPs)
scaffold0049 (14-206)||(38709-38901)
[»] chr3 (3 HSPs)
chr3 (55-206)||(11776443-11776594)
chr3 (14-120)||(27088750-27088856)
chr3 (15-77)||(11773687-11773749)
[»] scaffold0144 (1 HSPs)
scaffold0144 (14-107)||(40224-40317)
[»] scaffold0210 (2 HSPs)
scaffold0210 (16-55)||(23422-23461)
scaffold0210 (16-55)||(24426-24465)
[»] chr1 (1 HSPs)
chr1 (16-55)||(36215735-36215774)
[»] chr8 (2 HSPs)
chr8 (24-57)||(40454892-40454925)
chr8 (16-108)||(9330261-9330353)


Alignment Details
Target: chr2 (Bit Score: 148; Significance: 3e-78; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 19 - 206
Target Start/End: Complemental strand, 41363059 - 41362872
Alignment:
Q  19 ataagaaaaataattcaatacgtttcatcaataatcaaaagaaagtcatataacaaaagttgtcatctagatattctcatccctaacaacataaaaatta 118  Q
    ||||||||||| ||||||||   ||| ||||||||||||||||||||||| |||||||||||||||||||||| |||||||| |||||||||||||||||    
T  41363059 ataagaaaaatgattcaataaacttcttcaataatcaaaagaaagtcatagaacaaaagttgtcatctagataatctcatccataacaacataaaaatta 41362960  T
Q  119 gctactcatgatgtttgtcaaaagctaaaagagaattgagaattacacatagaattgcaattgaatgatgatcaaagctagttgaatc 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||    
T  41362959 gctactcatgatgtttgtcaaaagctaaaagagaattgagaattacacatagaattgcaattgaatgatgatcaaagccggttgaatc 41362872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 48 - 107
Target Start/End: Complemental strand, 28633821 - 28633762
Alignment:
Q  48 aataatcaaaagaaagtcatataacaaaagttgtcatctagatattctcatccctaacaa 107  Q
    ||||||||||||||||||||| |||||||||||||||||||||| | |||||||||||||    
T  28633821 aataatcaaaagaaagtcatagaacaaaagttgtcatctagataatttcatccctaacaa 28633762  T

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Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 14 - 88
Target Start/End: Original strand, 44679929 - 44680003
Alignment:
Q  14 cagagataagaaaaataattcaatacgtttcatcaataatcaaaagaaagtcatataacaaaagttgtcatctag 88  Q
    |||||||||||||||| ||||||||   |||||||||||| | || |||||||||||||||||||| ||||||||    
T  44679929 cagagataagaaaaatgattcaataaacttcatcaataattagaataaagtcatataacaaaagttttcatctag 44680003  T

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Target: chr7 (Bit Score: 145; Significance: 2e-76; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 14 - 206
Target Start/End: Complemental strand, 23409695 - 23409503
Alignment:
Q  14 cagagataagaaaaataattcaatacgtttcatcaataatcaaaagaaagtcatataacaaaagttgtcatctagatattctcatccctaacaacataaa 113  Q
    |||||||||||||||| ||||||||   ||| ||||||||||||||||| ||||| |||||||||||||||||||||| |||||||||||||||||  ||    
T  23409695 cagagataagaaaaatgattcaataaacttcttcaataatcaaaagaaaatcatagaacaaaagttgtcatctagataatctcatccctaacaacacgaa 23409596  T
Q  114 aattagctactcatgatgtttgtcaaaagctaaaagagaattgagaattacacatagaattgcaattgaatgatgatcaaagctagttgaatc 206  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||    
T  23409595 aattagctactcatgatgtttgtcaaaagctaaaagagaattgagaattacacatataattgcaattgaatgatgatcaaagccagttgaatc 23409503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 15 - 206
Target Start/End: Original strand, 9954113 - 9954304
Alignment:
Q  15 agagataagaaaaataattcaatacgtttcatcaataatcaaaagaaagtcatataacaaaagttgtcatctagatattctcatccctaacaacataaaa 114  Q
    ||||||||||||||| ||||||||   ||||||||||||||||| ||||| |||| ||||||||||||||||||||| |||||||||||||||   | ||    
T  9954113 agagataagaaaaatgattcaataaacttcatcaataatcaaaataaagtaatatgacaaaagttgtcatctagataatctcatccctaacaattgagaa 9954212  T
Q  115 attagctactcatgatgtttgtcaaaagctaaaagagaattgagaattacacatagaattgcaattgaatgatgatcaaagctagttgaatc 206  Q
      |||||||||||||||||||||||||| |||||||||||||||||||||||||| |||  |  |||| ||||||||||||| |||||||||    
T  9954213 tctagctactcatgatgtttgtcaaaagttaaaagagaattgagaattacacataaaatcaccgttgattgatgatcaaagccagttgaatc 9954304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 55
Target Start/End: Complemental strand, 25137096 - 25137057
Alignment:
Q  16 gagataagaaaaataattcaatacgtttcatcaataatca 55  Q
    ||||||||||||||||||||||| ||||||||||||||||    
T  25137096 gagataagaaaaataattcaataagtttcatcaataatca 25137057  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 55
Target Start/End: Complemental strand, 30758647 - 30758608
Alignment:
Q  16 gagataagaaaaataattcaatacgtttcatcaataatca 55  Q
    ||||||||||||| ||||||||| ||||||||||||||||    
T  30758647 gagataagaaaaacaattcaataagtttcatcaataatca 30758608  T

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Target: chr6 (Bit Score: 122; Significance: 9e-63; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 122; E-Value: 9e-63
Query Start/End: Original strand, 14 - 195
Target Start/End: Complemental strand, 35023749 - 35023568
Alignment:
Q  14 cagagataagaaaaataattcaatacgtttcatcaataatcaaaagaaagtcatataacaaaagttgtcatctagatattctcatccctaacaacataaa 113  Q
    |||||||||||||||| ||||||||   ||  ||||||||||||||||||||||| |||||||||| ||||||||||| ||||||||||||||||| |||    
T  35023749 cagagataagaaaaatgattcaataaacttattcaataatcaaaagaaagtcatagaacaaaagttatcatctagataatctcatccctaacaacaaaaa 35023650  T
Q  114 aattagctactcatgatgtttgtcaaaagctaaaagagaattgagaattacacatagaattgcaattgaatgatgatcaaag 195  Q
    ||||||||||||||||||||||||||||| ||||| ||||||||||||| ||||||||||| || |||||||||||||||||    
T  35023649 aattagctactcatgatgtttgtcaaaagttaaaaaagaattgagaattgcacatagaattacagttgaatgatgatcaaag 35023568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 15 - 130
Target Start/End: Complemental strand, 2879995 - 2879880
Alignment:
Q  15 agagataagaaaaataattcaatacgtttcatcaataatcaaaagaaagtcatataacaaaagttgtcatctagatattctcatccctaacaacataaaa 114  Q
    ||||||||||||||| ||||||||   ||| ||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||| |||    
T  2879995 agagataagaaaaatgattcaataaacttcttcaataatcaaaagaaaatcatataacaaaagttgtcatctagatactctcatccctaacaacatgaaa 2879896  T
Q  115 attagctactcatgat 130  Q
    ||||||||||||||||    
T  2879895 attagctactcatgat 2879880  T

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Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 16 - 130
Target Start/End: Complemental strand, 33354058 - 33353944
Alignment:
Q  16 gagataagaaaaataattcaatacgtttcatcaataatcaaaagaaagtcatataacaaaagttgtcatctagatattctcatccctaacaacataaaaa 115  Q
    ||||||||||||||||||||||| ||||||||||||| || ||  || ||| || ||||||||  |||||||| ||| |||||||| || ||| |  |      
T  33354058 gagataagaaaaataattcaataagtttcatcaataaacataatcaaatcacatgacaaaagtattcatctaggtatactcatccccaataacttggagt 33353959  T
Q  116 ttagctactcatgat 130  Q
    |||||||||||||||    
T  33353958 ttagctactcatgat 33353944  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 55
Target Start/End: Complemental strand, 28871740 - 28871701
Alignment:
Q  16 gagataagaaaaataattcaatacgtttcatcaataatca 55  Q
    ||||||||||||| ||||||||| ||||||||||||||||    
T  28871740 gagataagaaaaacaattcaataagtttcatcaataatca 28871701  T

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Target: chr4 (Bit Score: 117; Significance: 9e-60; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 14 - 194
Target Start/End: Original strand, 46671342 - 46671522
Alignment:
Q  14 cagagataagaaaaataattcaatacgtttcatcaataatcaaaagaaagtcatataacaaaagttgtcatctagatattctcatccctaacaacataaa 113  Q
    |||||||||||||||| ||||||||   ||  ||||||||||||| ||||| ||| ||||||||||||||| |||||| |||||||||||||||||  ||    
T  46671342 cagagataagaaaaatgattcaataaacttattcaataatcaaaataaagttatagaacaaaagttgtcatttagataatctcatccctaacaacaagaa 46671441  T
Q  114 aattagctactcatgatgtttgtcaaaagctaaaagagaattgagaattacacatagaattgcaattgaatgatgatcaaa 194  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||| ||||||||    
T  46671442 aattagctactcatgatgtttgtcaaaagttaaaagagaattgagaattacacatagaattacaattgaatgttgatcaaa 46671522  T

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Target: chr4; HSP #2
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 17 - 206
Target Start/End: Complemental strand, 16420253 - 16420064
Alignment:
Q  17 agataagaaaaataattcaatacgtttcatcaataatcaaaagaaagtcatataacaaaagttgtcatctagatattctcatccctaacaacataaaaat 116  Q
    ||||||||||||| ||||||||   ||| ||||||||||||  ||||||||| |||||||||||||||||||||| |||||||||||||||   | ||      
T  16420253 agataagaaaaatgattcaataaacttcttcaataatcaaattaaagtcatagaacaaaagttgtcatctagataatctcatccctaacaattgagaatc 16420154  T
Q  117 tagctactcatgatgtttgtcaaaagctaaaagagaattgagaattacacatagaattgcaattgaatgatgatcaaagctagttgaatc 206  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||| | |||||||    
T  16420153 taactactcatgatgtttgtcaaaagctaaaagagaattgagaattacacataaaattgcagttgaatgatgatcaaagccaattgaatc 16420064  T

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Target: chr4; HSP #3
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 17 - 206
Target Start/End: Original strand, 55585154 - 55585343
Alignment:
Q  17 agataagaaaaataattcaatacgtttcatcaataatcaaaagaaagtcatataacaaaagttgtcatctagatattctcatccctaacaacataaaaat 116  Q
    ||||||||||||| ||||||||   ||||||||||||||||| |||||||||| ||||||||||||||||||||| |||||||||||| ||   | ||      
T  55585154 agataagaaaaatgattcaataaacttcatcaataatcaaaataaagtcatatgacaaaagttgtcatctagataatctcatccctaataattgagaatc 55585253  T
Q  117 tagctactcatgatgtttgtcaaaagctaaaagagaattgagaattacacatagaattgcaattgaatgatgatcaaagctagttgaatc 206  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||  || | |  |||| ||||||||||||| |||| ||||    
T  55585254 tagctactcatgatgtttgtcaaaagttaaaagagaattgagaattacacattaaactaccgttgattgatgatcaaagccagttaaatc 55585343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 14 - 130
Target Start/End: Complemental strand, 53437036 - 53436921
Alignment:
Q  14 cagagataagaaaaataattcaatacgtttcatcaataatcaaaagaaagtcatataacaaaagttgtcatctagatattctcatccctaacaacataaa 113  Q
    |||||||||||||||| ||||||||   ||| |||||||||| || ||||||||||||||||||||||||||| |||| |||||||||||||||||| ||    
T  53437036 cagagataagaaaaatgattcaataaacttcttcaataatcagaa-aaagtcatataacaaaagttgtcatctcgatactctcatccctaacaacatgaa 53436938  T
Q  114 aattagctactcatgat 130  Q
    |||||||||||||||||    
T  53436937 aattagctactcatgat 53436921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 46 - 128
Target Start/End: Complemental strand, 987479 - 987397
Alignment:
Q  46 tcaataatcaaaagaaagtcatataacaaaagttgtcatctagatattctcatccctaacaacataaaaattagctactcatg 128  Q
    ||||||||||||| ||| |||||  ||||||||||||||||| ||| | ||||| ||||||| | | |||||||| |||||||    
T  987479 tcaataatcaaaataaaatcatagtacaaaagttgtcatctaaataatttcatctctaacaataaagaaattagccactcatg 987397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 16 - 54
Target Start/End: Original strand, 3216270 - 3216308
Alignment:
Q  16 gagataagaaaaataattcaatacgtttcatcaataatc 54  Q
    ||||||||||||||||||||||| |||||||||||||||    
T  3216270 gagataagaaaaataattcaataagtttcatcaataatc 3216308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 55
Target Start/End: Original strand, 6673614 - 6673653
Alignment:
Q  16 gagataagaaaaataattcaatacgtttcatcaataatca 55  Q
    ||||||||||||| ||||||||| ||||||||||||||||    
T  6673614 gagataagaaaaacaattcaataagtttcatcaataatca 6673653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0434 (Bit Score: 115; Significance: 1e-58; HSPs: 1)
Name: scaffold0434
Description:

Target: scaffold0434; HSP #1
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 11 - 205
Target Start/End: Complemental strand, 11185 - 10991
Alignment:
Q  11 gagcagagataagaaaaataattcaatacgtttcatcaataatcaaaagaaagtcatataacaaaagttgtcatctagatattctcatccctaacaacat 110  Q
    ||||||||||||||||||| ||||||||   ||||||||||||||||| |||||||||| ||||||||||||||||||||| |||||||||||||||       
T  11185 gagcagagataagaaaaatgattcaataaacttcatcaataatcaaaataaagtcatatgacaaaagttgtcatctagataatctcatccctaacaattg 11086  T
Q  111 aaaaattagctactcatgatgtttgtcaaaagctaaaagagaattgagaattacacatagaattgcaattgaatgatgatcaaagctagttgaat 205  Q
    | ||  || ||||||||||||||||||||||| |||||||||||||||||||||||| | |||| || |||| ||||||||||||||||||||||    
T  11085 agaatctaactactcatgatgtttgtcaaaaggtaaaagagaattgagaattacacaaaaaattacagttgattgatgatcaaagctagttgaat 10991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 115; Significance: 1e-58; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 14 - 196
Target Start/End: Complemental strand, 275663 - 275481
Alignment:
Q  14 cagagataagaaaaataattcaatacgtttcatcaataatcaaaagaaagtcatataacaaaagttgtcatctagatattctcatccctaacaacataaa 113  Q
    |||||||||||||||| ||||||||   ||| ||||||||||||  ||||||||| |||||||||||||||||||||| |||||||||||||||   | |    
T  275663 cagagataagaaaaatgattcaataaacttcttcaataatcaaattaaagtcatagaacaaaagttgtcatctagataatctcatccctaacaattgaga 275564  T
Q  114 aattagctactcatgatgtttgtcaaaagctaaaagagaattgagaattacacatagaattgcaattgaatgatgatcaaagc 196  Q
    | ||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| ||||||||||||||||||    
T  275563 atttagctactcatgatgtttgtcaaaagttaaaagagaattgagaattacacataaaattgcagttgaatgatgatcaaagc 275481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 14 - 206
Target Start/End: Original strand, 38709 - 38901
Alignment:
Q  14 cagagataagaaaaataattcaatacgtttcatcaataatcaaaagaaagtcatataacaaaagttgtcatctagatattctcatccctaacaacataaa 113  Q
    |||||||||||||||| ||||||||   ||||||||||||||||| |||||||||| ||||||||||||||||||||| |||||||||||||||   | |    
T  38709 cagagataagaaaaatgattcaataaacttcatcaataatcaaaataaagtcatatgacaaaagttgtcatctagataatctcatccctaacaattgaga 38808  T
Q  114 aattagctactcatgatgtttgtcaaaagctaaaagagaattgagaattacacatagaattgcaattgaatgatgatcaaagctagttgaatc 206  Q
    |  |||||||||||||||||||||| ||| |||||||||||||||||||||| ||  || | |  |||| ||||||||||||| |||| ||||    
T  38809 atctagctactcatgatgtttgtcagaagttaaaagagaattgagaattacagattaaactaccgttgattgatgatcaaagccagttaaatc 38901  T

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Target: chr3 (Bit Score: 84; Significance: 4e-40; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 55 - 206
Target Start/End: Original strand, 11776443 - 11776594
Alignment:
Q  55 aaaagaaagtcatataacaaaagttgtcatctagatattctcatccctaacaacataaaaattagctactcatgatgtttgtcaaaagctaaaagagaat 154  Q
    |||| |||||||||| ||||||||||||||||||||| |||||||||||||||   | ||  |||||||||||||||||||||||||| |||||||||||    
T  11776443 aaaaaaaagtcatatgacaaaagttgtcatctagataatctcatccctaacaattgagaatctagctactcatgatgtttgtcaaaagataaaagagaat 11776542  T
Q  155 tgagaattacacatagaattgcaattgaatgatgatcaaagctagttgaatc 206  Q
    ||||||||||||||| || | |  |||| ||||||||||||| |||||||||    
T  11776543 tgagaattacacataaaactacccttgattgatgatcaaagccagttgaatc 11776594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 14 - 120
Target Start/End: Original strand, 27088750 - 27088856
Alignment:
Q  14 cagagataagaaaaataattcaatacgtttcatcaataatcaaaagaaagtcatataacaaaagttgtcatctagatattctcatccctaacaacataaa 113  Q
    |||||||||||||||| ||| ||||   |||||||||||||| || ||||||||| |||||||||||||||||||||| ||||||||||||||| | | |    
T  27088750 cagagataagaaaaatgatttaataaacttcatcaataatcagaataaagtcatagaacaaaagttgtcatctagataatctcatccctaacaatagaga 27088849  T
Q  114 aattagc 120  Q
    |||||||    
T  27088850 aattagc 27088856  T

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Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 15 - 77
Target Start/End: Original strand, 11773687 - 11773749
Alignment:
Q  15 agagataagaaaaataattcaatacgtttcatcaataatcaaaagaaagtcatataacaaaag 77  Q
    ||||||||||||||| ||||||||   ||||||||||||||||| |||||||||| |||||||    
T  11773687 agagataagaaaaatgattcaataaacttcatcaataatcaaaataaagtcatatgacaaaag 11773749  T

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Target: scaffold0144 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: scaffold0144
Description:

Target: scaffold0144; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 14 - 107
Target Start/End: Original strand, 40224 - 40317
Alignment:
Q  14 cagagataagaaaaataattcaatacgtttcatcaataatcaaaagaaagtcatataacaaaagttgtcatctagatattctcatccctaacaa 107  Q
    |||||||||||||||| ||||||||   ||| ||||||||||||||||||||||| |||||||||||||||||||||| ||||||||| |||||    
T  40224 cagagataagaaaaatgattcaataaacttcttcaataatcaaaagaaagtcatagaacaaaagttgtcatctagataatctcatcccaaacaa 40317  T

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Target: scaffold0210 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: scaffold0210
Description:

Target: scaffold0210; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 55
Target Start/End: Original strand, 23422 - 23461
Alignment:
Q  16 gagataagaaaaataattcaatacgtttcatcaataatca 55  Q
    ||||||||||||| ||||||||| ||||||||||||||||    
T  23422 gagataagaaaaacaattcaataagtttcatcaataatca 23461  T

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Target: scaffold0210; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 55
Target Start/End: Original strand, 24426 - 24465
Alignment:
Q  16 gagataagaaaaataattcaatacgtttcatcaataatca 55  Q
    ||||||||||||| ||||||||| ||||||||||||||||    
T  24426 gagataagaaaaacaattcaataagtttcatcaataatca 24465  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 55
Target Start/End: Complemental strand, 36215774 - 36215735
Alignment:
Q  16 gagataagaaaaataattcaatacgtttcatcaataatca 55  Q
    ||||||||||||| ||||||||| ||||||||||||||||    
T  36215774 gagataagaaaaacaattcaataagtttcatcaataatca 36215735  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000007; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 24 - 57
Target Start/End: Complemental strand, 40454925 - 40454892
Alignment:
Q  24 aaaaataattcaatacgtttcatcaataatcaaa 57  Q
    ||||||||||||||| ||||||||||||||||||    
T  40454925 aaaaataattcaataagtttcatcaataatcaaa 40454892  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 108
Target Start/End: Complemental strand, 9330353 - 9330261
Alignment:
Q  16 gagataagaaaaataattcaatacgtttcatcaataatcaaaagaaagtcatataacaaaagttgtcatctagatattctcatccctaacaac 108  Q
    ||||||||||||| ||||||||| |||||| ||||||||| ||   | ||| || ||||||||  |||||||| | | |||||||| ||||||    
T  9330353 gagataagaaaaacaattcaataagtttcagcaataatcataatccaatcacatgacaaaagtattcatctaggtctactcatccccaacaac 9330261  T

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