View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12898_low_36 (Length: 218)
Name: NF12898_low_36
Description: NF12898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12898_low_36 |
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Alignment Details
Target: chr8 (Bit Score: 190; Significance: 1e-103; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 2516877 - 2516676
Alignment:
| Q |
1 |
tagtttcttaattcttgggttaggaatgatttgttgtaagttgtaacttgaaaacgagtatgattaccaagaatccatttagtttctttttattgaccaa |
100 |
Q |
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| T |
2516877 |
tagtttcttaattcttgggttaggaatgatttgttgtaagttgtaacttgaaaacgagtatgattaccaagaatccatttagtttctttttattgaccaa |
2516778 |
T |
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| Q |
101 |
caaaaatattgtcttcctttactttaatgtacgtcttttgcaactaggtggatctgttaaaaaataaatttggatacgatgaagccattaactacaaaga |
200 |
Q |
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| T |
2516777 |
caaaaatattgtcttcctttactttaatgtacatcttttgcaaccaggtggatatgttaaaaaataaatttggatacgatgaagccattaactacaaaga |
2516678 |
T |
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| Q |
201 |
ag |
202 |
Q |
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|| |
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| T |
2516677 |
ag |
2516676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 82 - 202
Target Start/End: Complemental strand, 2505862 - 2505742
Alignment:
| Q |
82 |
gtttctttttattgaccaacaaaaatattgtcttcctttactttaatgtacgtcttttgcaactaggtggatctgttaaaaaataaatttggatacgatg |
181 |
Q |
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| T |
2505862 |
gtttcttttcattcacaagcaaaaatatggccttcctttacttaaaaatatatcttttgcaaccaggtggatctgttgaagaataaatttggatacgatg |
2505763 |
T |
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| Q |
182 |
aagccattaactacaaagaag |
202 |
Q |
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| T |
2505762 |
aagccattaactacaaagaag |
2505742 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 118 - 202
Target Start/End: Complemental strand, 2512484 - 2512400
Alignment:
| Q |
118 |
tttactttaatgtacgtcttttgcaactaggtggatctgttaaaaaataaatttggatacgatgaagccattaactacaaagaag |
202 |
Q |
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| T |
2512484 |
tttactttaatgtatatcttctggaaccaggtggatctgttgaagaataaatttggatacgatgaagccattaactacaaagaag |
2512400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 146 - 202
Target Start/End: Original strand, 1459414 - 1459470
Alignment:
| Q |
146 |
aggtggatctgttaaaaaataaatttggatacgatgaagccattaactacaaagaag |
202 |
Q |
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| T |
1459414 |
aggtggatttgttgaaaaataaatttggatatgatgaagcctttaactacaaagaag |
1459470 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 146 - 202
Target Start/End: Original strand, 2429121 - 2429177
Alignment:
| Q |
146 |
aggtggatctgttaaaaaataaatttggatacgatgaagccattaactacaaagaag |
202 |
Q |
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| T |
2429121 |
aggtggatttgttgaaaaataaatttggatatgatgaagcctttaactacaaagaag |
2429177 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 143 - 202
Target Start/End: Original strand, 2435471 - 2435530
Alignment:
| Q |
143 |
actaggtggatctgttaaaaaataaatttggatacgatgaagccattaactacaaagaag |
202 |
Q |
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| T |
2435471 |
actaggtagatctgttgaagaataaatttggatatgatgaagcctttaactacaaagaag |
2435530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 146 - 202
Target Start/End: Original strand, 2432039 - 2432095
Alignment:
| Q |
146 |
aggtggatctgttaaaaaataaatttggatacgatgaagccattaactacaaagaag |
202 |
Q |
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|||||||||| || || |||||||||||||| |||||||| ||||||||||||||| |
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| T |
2432039 |
aggtggatcttttgaagaataaatttggatatgatgaagcatttaactacaaagaag |
2432095 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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