View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12898_low_38 (Length: 207)
Name: NF12898_low_38
Description: NF12898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12898_low_38 |
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Alignment Details
Target: chr5 (Bit Score: 177; Significance: 1e-95; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 1 - 189
Target Start/End: Original strand, 38991000 - 38991188
Alignment:
| Q |
1 |
aatgctaaaagaagaacatgcagggttggcaatgacttcagaaggaacattatcaacattgggattgacataagtgccagagagagacgtcatttggaca |
100 |
Q |
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| T |
38991000 |
aatgctaaaagaagaacatgcagggttggcaatgacttcagaaggaacattatcaacattgggattgacataagtgccagagagagacgtcatttggaca |
38991099 |
T |
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| Q |
101 |
ggtccttcaatagtgagtggtggggtatgggataacgagttgtgaatggtgatgtcagagacaataccagaacctctcagcactgtgat |
189 |
Q |
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| T |
38991100 |
ggtccttcaatagtgagtggtggggtatgagataacgagctgtgaatggtgatgtcagagacaataccaaaacctctcagcactgtgat |
38991188 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 179
Target Start/End: Complemental strand, 38954775 - 38954597
Alignment:
| Q |
1 |
aatgctaaaagaagaacatgcagggttggcaatgacttcagaaggaacattatcaacattgggattgacataagtgccagagagagacgtcatttggaca |
100 |
Q |
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| T |
38954775 |
aatgctaaaagaagaatggttagggttggtgatgaattcagaaggaacagtatcagaattgggattgatgtaagtgccagagagagacatcattttgatg |
38954676 |
T |
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| Q |
101 |
ggtccttcaatagtgagtggtggggtatgggataacgagttgtgaatggtgatgtcagagacaataccagaacctctca |
179 |
Q |
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| T |
38954675 |
ggtccttcaatagttagtgcaggggaatgagatgtcgagttacggatggtaatattagagacaagaccggaacctctca |
38954597 |
T |
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