View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12898_low_5 (Length: 504)

Name: NF12898_low_5
Description: NF12898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12898_low_5
NF12898_low_5
[»] chr7 (19 HSPs)
chr7 (71-317)||(39581316-39581562)
chr7 (323-497)||(39578063-39578237)
chr7 (361-497)||(39359690-39359826)
chr7 (361-497)||(39551714-39551850)
chr7 (364-497)||(39345145-39345278)
chr7 (361-497)||(39592573-39592709)
chr7 (361-497)||(39568561-39568697)
chr7 (361-493)||(39625169-39625300)
chr7 (18-121)||(39956973-39957075)
chr7 (364-497)||(39333866-39333999)
chr7 (21-121)||(44156136-44156235)
chr7 (18-121)||(37534448-37534550)
chr7 (21-120)||(576323-576421)
chr7 (21-121)||(24482157-24482257)
chr7 (21-121)||(31579864-31579963)
chr7 (360-497)||(39542497-39542634)
chr7 (18-62)||(39778856-39778900)
chr7 (18-120)||(38433188-38433289)
chr7 (21-61)||(47396524-47396564)
[»] chr8 (11 HSPs)
chr8 (21-119)||(16682395-16682492)
chr8 (18-119)||(42709258-42709358)
chr8 (18-119)||(24983408-24983510)
chr8 (18-119)||(41529744-41529844)
chr8 (23-119)||(39028622-39028717)
chr8 (18-119)||(288623-288723)
chr8 (21-117)||(18307144-18307239)
chr8 (22-62)||(40940663-40940703)
chr8 (21-104)||(30438752-30438834)
chr8 (21-119)||(8387798-8387895)
chr8 (21-62)||(1432017-1432058)
[»] chr2 (9 HSPs)
chr2 (22-119)||(24079927-24080024)
chr2 (377-492)||(44237170-44237285)
chr2 (377-492)||(44214202-44214317)
chr2 (18-119)||(23865477-23865575)
chr2 (21-119)||(44196078-44196174)
chr2 (377-492)||(44226372-44226487)
chr2 (21-62)||(37200094-37200135)
chr2 (71-104)||(43843653-43843686)
chr2 (71-120)||(44719567-44719616)
[»] chr1 (22 HSPs)
chr1 (22-121)||(22867567-22867666)
chr1 (18-117)||(52020651-52020749)
chr1 (21-121)||(39506330-39506430)
chr1 (21-119)||(34747719-34747816)
chr1 (18-95)||(11921544-11921620)
chr1 (22-119)||(20582651-20582747)
chr1 (71-119)||(28051764-28051812)
chr1 (21-118)||(29018873-29018969)
chr1 (23-115)||(42737092-42737183)
chr1 (21-120)||(7112194-7112292)
chr1 (18-121)||(23616162-23616264)
chr1 (18-121)||(23731883-23731985)
chr1 (21-119)||(19082227-19082321)
chr1 (21-119)||(19130115-19130209)
chr1 (21-119)||(21443035-21443135)
chr1 (18-121)||(23647493-23647595)
chr1 (71-119)||(29019409-29019457)
chr1 (21-117)||(13522231-13522326)
chr1 (18-96)||(37691566-37691643)
chr1 (22-62)||(5942995-5943035)
chr1 (21-53)||(5296805-5296837)
chr1 (81-121)||(23728522-23728562)
[»] chr4 (19 HSPs)
chr4 (21-122)||(2832281-2832382)
chr4 (21-119)||(29004493-29004590)
chr4 (18-119)||(36899398-36899498)
chr4 (21-119)||(36311829-36311926)
chr4 (21-119)||(36326038-36326135)
chr4 (365-489)||(2872979-2873103)
chr4 (21-121)||(40696521-40696619)
chr4 (21-120)||(43318263-43318360)
chr4 (377-494)||(2901734-2901851)
chr4 (21-119)||(6201615-6201712)
chr4 (21-62)||(36662198-36662239)
chr4 (21-62)||(44519959-44520000)
chr4 (27-119)||(3735969-3736060)
chr4 (71-121)||(4441167-4441217)
chr4 (381-494)||(2883176-2883289)
chr4 (18-62)||(728627-728671)
chr4 (71-121)||(19730806-19730856)
chr4 (74-120)||(30260182-30260227)
chr4 (18-62)||(38055087-38055131)
[»] chr3 (13 HSPs)
chr3 (21-121)||(43512274-43512373)
chr3 (21-119)||(42934635-42934732)
chr3 (18-119)||(36633939-36634039)
chr3 (21-102)||(17476177-17476258)
chr3 (22-119)||(34947976-34948073)
chr3 (18-117)||(52107774-52107872)
chr3 (71-121)||(3696232-3696282)
chr3 (21-121)||(45698321-45698420)
chr3 (21-121)||(45876326-45876427)
chr3 (18-62)||(40320068-40320112)
chr3 (71-116)||(36980752-36980797)
chr3 (71-116)||(37006191-37006236)
chr3 (72-120)||(9598828-9598876)
[»] chr5 (11 HSPs)
chr5 (22-119)||(35169976-35170072)
chr5 (21-120)||(19263046-19263144)
chr5 (18-118)||(791362-791463)
chr5 (18-120)||(16467452-16467553)
chr5 (21-117)||(33053316-33053412)
chr5 (18-62)||(29241212-29241256)
chr5 (22-113)||(7784311-7784401)
chr5 (71-119)||(29241592-29241640)
chr5 (74-121)||(5250835-5250882)
chr5 (21-62)||(294810-294851)
chr5 (21-62)||(6829315-6829356)
[»] scaffold0004 (1 HSPs)
scaffold0004 (16-120)||(216575-216678)
[»] chr6 (1 HSPs)
chr6 (22-62)||(31297851-31297891)
[»] scaffold0006 (1 HSPs)
scaffold0006 (71-119)||(120195-120243)


Alignment Details
Target: chr7 (Bit Score: 199; Significance: 1e-108; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 71 - 317
Target Start/End: Original strand, 39581316 - 39581562
Alignment:
Q  71 atcttcttgaatatgtctaacccggacaacgccgaataaatacactagtatcattcataactaacattctctcaatttttgacaaatcactaaatttgaa 170  Q
    |||||||||||||| ||||||||||||||||||  ||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  39581316 atcttcttgaatatatctaacccggacaacgccagataaatacattagtatcattcataactaacattctctcaatttttgactaatcactaaatttgaa 39581415  T
Q  171 gatatttacttcttttcaaactttgcttccacgagctatccttccattttcaaatgtagttttaattgctaaactagtatccagggacatcggttagcat 270  Q
    ||||||||||||||||||||||||||||| | |||||||||||||||||||||| ||||||||||||||||||||||| |||| ||||||| ||||||||    
T  39581416 gatatttacttcttttcaaactttgcttcgaggagctatccttccattttcaaacgtagttttaattgctaaactagtgtccatggacatcagttagcat 39581515  T
Q  271 catcctttatattagagaaattatatttacattctcttcggtttcac 317  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||    
T  39581516 catcctttatattagagagattatatttacattctcttcggtttcac 39581562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 163; E-Value: 8e-87
Query Start/End: Original strand, 323 - 497
Target Start/End: Original strand, 39578063 - 39578237
Alignment:
Q  323 ttgagatggaacatttagcaaaagatgcaatgccgtgaactaaccatatctaggtccaacaccttggaatcttgctgagaattccaaagtttctctaact 422  Q
    ||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39578063 ttgagatggaacatttagcaaaagatgcaatgccgtgcactaaccacatctaggtccaacaccttggaatcttgctgagaattccaaagtttctctaact 39578162  T
Q  423 gtcaattctccaatgtgaagatggttttgactgacataagcagcagttctttgaggtacaaactcattcatctca 497  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39578163 gtcaattctccaatgtgaagatcgttttgactgacataagcagcagttctttgaggtacaaactcattcatctca 39578237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 361 - 497
Target Start/End: Complemental strand, 39359826 - 39359690
Alignment:
Q  361 actaaccatatctaggtccaacaccttggaatcttgctgagaattccaaagtttctctaactgtcaattctccaatgtgaagatggttttgactgacata 460  Q
    |||||||||| | ||||||||| ||||||| ||| ||||||||  |||| ||||||||||| |||| |||||||||||||||||  ||||||   |||||    
T  39359826 actaaccataacgaggtccaactccttggactctagctgagaaggccaaggtttctctaacagtcatttctccaatgtgaagatcattttgatccacata 39359727  T
Q  461 agcagcagttctttgaggtacaaactcattcatctca 497  Q
    ||||||||||||||| |||||||||||| ||||||||    
T  39359726 agcagcagttctttggggtacaaactcactcatctca 39359690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 361 - 497
Target Start/End: Original strand, 39551714 - 39551850
Alignment:
Q  361 actaaccatatctaggtccaacaccttggaatcttgctgagaattccaaagtttctctaactgtcaattctccaatgtgaagatggttttgactgacata 460  Q
    |||||||||| | ||| ||||| |||||||  |||||||||||  |||| ||||||||||| |||| |||||||||||||||||  ||||||   |||||    
T  39551714 actaaccataacgaggcccaactccttggacccttgctgagaaagccaaggtttctctaacagtcatttctccaatgtgaagatcattttgatccacata 39551813  T
Q  461 agcagcagttctttgaggtacaaactcattcatctca 497  Q
    |||||||||||||||||| ||||||||||||||||||    
T  39551814 agcagcagttctttgaggcacaaactcattcatctca 39551850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 364 - 497
Target Start/End: Complemental strand, 39345278 - 39345145
Alignment:
Q  364 aaccatatctaggtccaacaccttggaatcttgctgagaattccaaagtttctctaactgtcaattctccaatgtgaagatggttttgactgacataagc 463  Q
    ||||||||  ||||||||| ||||||| |||||| |||||  |||| ||||||||||| ||||||||||||||||||||||  ||||||   ||||||||    
T  39345278 aaccatattgaggtccaactccttggactcttgccgagaaggccaatgtttctctaacagtcaattctccaatgtgaagatcattttgatccacataagc 39345179  T
Q  464 agcagttctttgaggtacaaactcattcatctca 497  Q
    |||||||||||| || ||||| ||| ||||||||    
T  39345178 agcagttctttgggggacaaattcactcatctca 39345145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 361 - 497
Target Start/End: Original strand, 39592573 - 39592709
Alignment:
Q  361 actaaccatatctaggtccaacaccttggaatcttgctgagaattccaaagtttctctaactgtcaattctccaatgtgaagatggttttgactgacata 460  Q
    |||||||||||  | | ||||| ||||||| |||||| |||||  |||  |||||||| || ||||||||||||| ||||||||  ||||||||||||||    
T  39592573 actaaccatattgatgcccaacgccttggactcttgcggagaaggccatcgtttctctgacagtcaattctccaaggtgaagatcattttgactgacata 39592672  T
Q  461 agcagcagttctttgaggtacaaactcattcatctca 497  Q
    ||||||||||||||| |||||||| || |||||||||    
T  39592673 agcagcagttctttggggtacaaattctttcatctca 39592709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 361 - 497
Target Start/End: Original strand, 39568561 - 39568697
Alignment:
Q  361 actaaccatatctaggtccaacaccttggaatcttgctgagaattccaaagtttctctaactgtcaattctccaatgtgaagatggttttgactgacata 460  Q
    |||||||||| | ||||||||| ||||||| || |||||||||  |||| |||||||| ||||||| |||||||||||||||||  ||||||   |||||    
T  39568561 actaaccataacgaggtccaactccttggactcgtgctgagaaggccaaggtttctcttactgtcatttctccaatgtgaagatcattttgatccacata 39568660  T
Q  461 agcagcagttctttgaggtacaaactcattcatctca 497  Q
     |||||||||| ||| || ||||||||| ||||||||    
T  39568661 tgcagcagttcgttgggggacaaactcactcatctca 39568697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 361 - 493
Target Start/End: Original strand, 39625169 - 39625300
Alignment:
Q  361 actaaccatatctaggtccaacaccttggaatcttgctgagaattccaaagtttctctaactgtcaattctccaatgtgaagatggttttgactgacata 460  Q
    |||||||||||| ||||||||| ||||| | ||||||||| ||  |||| |||||||| || |||||||| |||| ||||  ||  ||||||||||||||    
T  39625169 actaaccatatcgaggtccaactccttgaactcttgctgaaaaggccaaggtttctctgacagtcaattc-ccaaggtgagtatcattttgactgacata 39625267  T
Q  461 agcagcagttctttgaggtacaaactcattcat 493  Q
    ||||||||||||||| || ||||||||||||||    
T  39625268 agcagcagttctttgtggcacaaactcattcat 39625300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 18 - 121
Target Start/End: Complemental strand, 39957075 - 39956973
Alignment:
Q  18 attccaatccgtgataaattttatttacggatatcatacatataannnnnnnnatcttcttgaatatgtctaacccggacaacgccgaataaatacacta 117  Q
    |||||||||||||||||||||||||| | ||||||||||||||||        ||||||||||||||||||||||||  |||||||| ||||||||||||    
T  39957075 attccaatccgtgataaattttatttgcagatatcatacatataattttttt-atcttcttgaatatgtctaacccgtgcaacgccggataaatacacta 39956977  T
Q  118 gtat 121  Q
    ||||    
T  39956976 gtat 39956973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 364 - 497
Target Start/End: Complemental strand, 39333999 - 39333866
Alignment:
Q  364 aaccatatctaggtccaacaccttggaatcttgctgagaattccaaagtttctctaactgtcaattctccaatgtgaagatggttttgactgacataagc 463  Q
    ||||||||  ||||||||| ||||||| |||||| |||||  |||  ||||||||||| ||||||||||||||||||||||  ||||||   ||||| ||    
T  39333999 aaccatattgaggtccaactccttggactcttgccgagaaggccagtgtttctctaacagtcaattctccaatgtgaagatcattttgatccacatatgc 39333900  T
Q  464 agcagttctttgaggtacaaactcattcatctca 497  Q
    |||||||||||| || ||||| ||| ||||||||    
T  39333899 agcagttctttgggggacaaattcactcatctca 39333866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 21 - 121
Target Start/End: Original strand, 44156136 - 44156235
Alignment:
Q  21 ccaatccgtgataaattttatttacggatatcatacatataannnnnnnnatcttcttgaatatgtctaacccggacaacgccgaataaatacactagta 120  Q
    ||||||||||||||||||||||| ||||||||||||||||||        |||||||||||||||||||| ||||||||| ||  |||||||||||||||    
T  44156136 ccaatccgtgataaattttatttgcggatatcatacatataa-tttttttatcttcttgaatatgtctaatccggacaacaccagataaatacactagta 44156234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 18 - 121
Target Start/End: Complemental strand, 37534550 - 37534448
Alignment:
Q  18 attccaatccgtgataaattttatttacggatatcatacatataannnnnnnnatcttcttgaatatgtctaacccggacaacgccgaataaatacacta 117  Q
    |||| ||||||||||||||||||||| | ||||||||||||||||        ||||||||||||||||||||| ||| |||||||| ||||||||||||    
T  37534550 attctaatccgtgataaattttatttgcagatatcatacatataattttttt-atcttcttgaatatgtctaactcgggcaacgccggataaatacacta 37534452  T
Q  118 gtat 121  Q
    ||||    
T  37534451 gtat 37534448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 21 - 120
Target Start/End: Complemental strand, 576421 - 576323
Alignment:
Q  21 ccaatccgtgataaattttatttacggatatcatacatataannnnnnnnatcttcttgaatatgtctaacccggacaacgccgaataaatacactagta 120  Q
    ||||||||||||||||||||||| | ||||||||| ||||||        ||||||||||||||||||||||||| ||||||||  ||||||||||||||    
T  576421 ccaatccgtgataaattttatttgcagatatcatatatataattttttt-atcttcttgaatatgtctaacccgggcaacgccgggtaaatacactagta 576323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 21 - 121
Target Start/End: Original strand, 24482157 - 24482257
Alignment:
Q  21 ccaatccgtgataaattttatttacggatatcatacatataannnnnnnnatcttcttgaatatgtctaacccggacaacgccgaataaatacactagta 120  Q
    ||||||||| ||||||||||||| || |||||||||||||||        ||||| |||||||||| |||||| | |||||||| |||||||||||||||    
T  24482157 ccaatccgtaataaattttatttgcgaatatcatacatataattttttttatctttttgaatatgtttaaccctgccaacgccggataaatacactagta 24482256  T
Q  121 t 121  Q
    |    
T  24482257 t 24482257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 21 - 121
Target Start/End: Complemental strand, 31579963 - 31579864
Alignment:
Q  21 ccaatccgtgataaattttatttacggatatcatacatataannnnnnnnatcttcttgaatatgtctaacccggacaacgccgaataaatacactagta 120  Q
    ||||||| ||||||||||||||| ||||||||||||||||||        ||||||||||| |||||| |||| ||||||||||  ||||||||||||||    
T  31579963 ccaatccatgataaattttatttgcggatatcatacatataa-tttttttatcttcttgaaaatgtctgacccagacaacgccgggtaaatacactagta 31579865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 360 - 497
Target Start/End: Original strand, 39542497 - 39542634
Alignment:
Q  360 aactaaccatatctaggtccaacaccttggaatcttgctgagaattccaaagtttctctaactgtcaattctccaatgtgaagatggttttgactgacat 459  Q
    ||||||||||| |  || ||||| |||||||  ||||| |||||  |||| ||||||||||| |||| ||||||||||||||| |  ||||||   ||||    
T  39542497 aactaaccataacgcggcccaactccttggacccttgccgagaaggccaaggtttctctaacagtcatttctccaatgtgaaggtcattttgatccacat 39542596  T
Q  460 aagcagcagttctttgaggtacaaactcattcatctca 497  Q
    |||| ||||||||||| || |||||||||  |||||||    
T  39542597 aagcggcagttctttgggggacaaactcacccatctca 39542634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 39778856 - 39778900
Alignment:
Q  18 attccaatccgtgataaattttatttacggatatcatacatataa 62  Q
    |||||||||||||||||||||||||| ||||||||||||||||||    
T  39778856 attccaatccgtgataaattttatttgcggatatcatacatataa 39778900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 18 - 120
Target Start/End: Complemental strand, 38433289 - 38433188
Alignment:
Q  18 attccaatccgtgataaattttatttacggatatcatacatataannnnnnnnatcttcttgaatatgtctaacccggacaacgccgaataaatacacta 117  Q
    |||| |||||| |||||||||||||| ||||||||||||||||||        |||||||| ||||| | ||||||| ||||||||  ||||||||||||    
T  38433289 attcaaatccgcgataaattttatttgcggatatcatacatataa-ttttttcatcttcttaaatatttataacccgaacaacgccagataaatacacta 38433191  T
Q  118 gta 120  Q
    |||    
T  38433190 gta 38433188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 21 - 61
Target Start/End: Original strand, 47396524 - 47396564
Alignment:
Q  21 ccaatccgtgataaattttatttacggatatcatacatata 61  Q
    |||||| |||||||||||||||| |||||||||||||||||    
T  47396524 ccaatctgtgataaattttatttgcggatatcatacatata 47396564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 62; Significance: 1e-26; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 21 - 119
Target Start/End: Original strand, 16682395 - 16682492
Alignment:
Q  21 ccaatccgtgataaattttatttacggatatcatacatataannnnnnnnatcttcttgaatatgtctaacccggacaacgccgaataaatacactagt 119  Q
    ||||||||||||||||||||||| ||||||||||||||||||        |||||||||||||||||||||||||||||||||| ||||||||||||||    
T  16682395 ccaatccgtgataaattttatttgcggatatcatacatataattttttt-atcttcttgaatatgtctaacccggacaacgccggataaatacactagt 16682492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 18 - 119
Target Start/End: Original strand, 42709258 - 42709358
Alignment:
Q  18 attccaatccgtgataaattttatttacggatatcatacatataannnnnnnnatcttcttgaatatgtctaacccggacaacgccgaataaatacacta 117  Q
    |||||||||||||||||||||||||| ||||||||||||||||||        |||||||||||||||||||| |||||||||| |  ||||||||||||    
T  42709258 attccaatccgtgataaattttatttgcggatatcatacatataa-tttttttatcttcttgaatatgtctaatccggacaacgtcagataaatacacta 42709356  T
Q  118 gt 119  Q
    ||    
T  42709357 gt 42709358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 18 - 119
Target Start/End: Original strand, 24983408 - 24983510
Alignment:
Q  18 attccaatccgtgataaattttatttacggatatcatacatataannnnnnnn-atcttcttgaatatgtctaacccggacaacgccgaataaatacact 116  Q
    |||||||||| | |||||||||||||| |||||||||||||||||         |||||||| ||||||||||||||||||||||||| |||||||||||    
T  24983408 attccaatccattataaattttatttatggatatcatacatataatttttttttatcttcttaaatatgtctaacccggacaacgccggataaatacact 24983507  T
Q  117 agt 119  Q
    |||    
T  24983508 agt 24983510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 18 - 119
Target Start/End: Original strand, 41529744 - 41529844
Alignment:
Q  18 attccaatccgtgataaattttatttacggatatcatacatataannnnnnnnatcttcttgaatatgtctaacccggacaacgccgaataaatacacta 117  Q
    |||||||||||||||||||||||||| ||||||||||||||||||        |||||||| ||||||||||||| || |||| ||| ||||||||||||    
T  41529744 attccaatccgtgataaattttattttcggatatcatacatataa-tttttttatcttcttaaatatgtctaaccagggcaacaccggataaatacacta 41529842  T
Q  118 gt 119  Q
    ||    
T  41529843 gt 41529844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 23 - 119
Target Start/End: Original strand, 39028622 - 39028717
Alignment:
Q  23 aatccgtgataaattttatttacggatatcatacatataannnnnnnnatcttcttgaatatgtctaacccggacaacgccgaataaatacactagt 119  Q
    ||||||||||||||||||||| ||| ||||||||||| ||        |||||||||||||||||||||| ||||||||||| ||||||||||||||    
T  39028622 aatccgtgataaattttatttgcgggtatcatacatacaattttttt-atcttcttgaatatgtctaacctggacaacgccggataaatacactagt 39028717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 18 - 119
Target Start/End: Original strand, 288623 - 288723
Alignment:
Q  18 attccaatccgtgataaattttatttacggatatcatacatataannnnnnnnatcttcttgaatatgtctaacccggacaacgccgaataaatacacta 117  Q
    |||||||| | ||||||||||||||| ||||||||||||||||||        |||||||||||||||||||||| || ||||||||  |||||||||||    
T  288623 attccaattcatgataaattttatttgcggatatcatacatataa-tttttttatcttcttgaatatgtctaacctgggcaacgccgggtaaatacacta 288721  T
Q  118 gt 119  Q
    ||    
T  288722 gt 288723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 21 - 117
Target Start/End: Complemental strand, 18307239 - 18307144
Alignment:
Q  21 ccaatccgtgataaattttatttacggatatcatacatataannnnnnnnatcttcttgaatatgtctaacccggacaacgccgaataaatacacta 117  Q
    ||||||||| ||||||||||||| ||||||| ||||||| ||        ||||||||||||||||||||||||| ||||||||  |||||||||||    
T  18307239 ccaatccgtaataaattttatttgcggatataatacatagaattttttg-atcttcttgaatatgtctaacccgggcaacgccgggtaaatacacta 18307144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 22 - 62
Target Start/End: Original strand, 40940663 - 40940703
Alignment:
Q  22 caatccgtgataaattttatttacggatatcatacatataa 62  Q
    |||||||||||||||||||||| ||||||||||||||||||    
T  40940663 caatccgtgataaattttatttgcggatatcatacatataa 40940703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 21 - 104
Target Start/End: Original strand, 30438752 - 30438834
Alignment:
Q  21 ccaatccgtgataaattttatttacggatatcatacatataannnnnnnnatcttcttgaatatgtctaacccggacaacgccg 104  Q
    ||||||||||||||| |||||||  |||||||||||||| ||        ||||||||||||||||||||||||| ||||||||    
T  30438752 ccaatccgtgataaaatttatttgtggatatcatacatagaattttttg-atcttcttgaatatgtctaacccgggcaacgccg 30438834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 21 - 119
Target Start/End: Complemental strand, 8387895 - 8387798
Alignment:
Q  21 ccaatccgtgataaattttatttacggatatcatacatataannnnnnnnatcttcttgaatatgtctaacccggacaacgccgaataaatacactagt 119  Q
    |||||| |||||||||||||||| |||||||||||| |||||        |||||||||||||||||||||  | |||||| ||  |||||||||||||    
T  8387895 ccaatctgtgataaattttatttgcggatatcatacttataa-tttttttatcttcttgaatatgtctaactggaacaacgtcgggtaaatacactagt 8387798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 62
Target Start/End: Original strand, 1432017 - 1432058
Alignment:
Q  21 ccaatccgtgataaattttatttacggatatcatacatataa 62  Q
    |||||| |||||||||||||||| |||||| |||||||||||    
T  1432017 ccaatctgtgataaattttatttgcggataccatacatataa 1432058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 62; Significance: 1e-26; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 22 - 119
Target Start/End: Original strand, 24079927 - 24080024
Alignment:
Q  22 caatccgtgataaattttatttacggatatcatacatataannnnnnnnatcttcttgaatatgtctaacccggacaacgccgaataaatacactagt 119  Q
    |||||||||||||||||||||| ||||||||||||||||||        ||||||||||||||||||||||||||||||||||  |||||||||||||    
T  24079927 caatccgtgataaattttatttgcggatatcatacatataattttttttatcttcttgaatatgtctaacccggacaacgccgggtaaatacactagt 24080024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 377 - 492
Target Start/End: Original strand, 44237170 - 44237285
Alignment:
Q  377 tccaacaccttggaatcttgctgagaattccaaagtttctctaactgtcaattctccaatgtgaagatggttttgactgacataagcagcagttctttga 476  Q
    |||||| |||||| |||||||||||||  |||| |||||||| || |||| ||||||||| |||| ||  | ||| |||| |||||| ||||||||||||    
T  44237170 tccaactccttggcatcttgctgagaaagccaaggtttctctcacagtcatttctccaatatgaacatcatgttggctgatataagccgcagttctttga 44237269  T
Q  477 ggtacaaactcattca 492  Q
    ||||||||||| ||||    
T  44237270 ggtacaaactcgttca 44237285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 377 - 492
Target Start/End: Original strand, 44214202 - 44214317
Alignment:
Q  377 tccaacaccttggaatcttgctgagaattccaaagtttctctaactgtcaattctccaatgtgaagatggttttgactgacataagcagcagttctttga 476  Q
    |||||| |||||| | |||||||||||  | || ||||| || || |||| |||||||||||||| ||  |  || |||| |||||||||||||||||||    
T  44214202 tccaactccttggcaccttgctgagaaagctaaggtttccctcacagtcatttctccaatgtgaacatcatgctggctgatataagcagcagttctttga 44214301  T
Q  477 ggtacaaactcattca 492  Q
    ||||||||||||||||    
T  44214302 ggtacaaactcattca 44214317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 18 - 119
Target Start/End: Complemental strand, 23865575 - 23865477
Alignment:
Q  18 attccaatccgtgataaattttatttacggatatcatacatataannnnnnnnatcttcttgaatatgtctaacccggacaacgccgaataaatacacta 117  Q
    ||||||||||||||||||||||||||  |||||||||||||   |        |||||||| |||||||||||||||| ||||||||  |||||||||||    
T  23865575 attccaatccgtgataaattttatttgtggatatcatacat---aatttttttatcttcttaaatatgtctaacccgggcaacgccgggtaaatacacta 23865479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 21 - 119
Target Start/End: Complemental strand, 44196174 - 44196078
Alignment:
Q  21 ccaatccgtgataaattttatttacggatatcatacatataannnnnnnnatcttcttgaatatgtctaacccggacaacgccgaataaatacactagt 119  Q
    |||||||||||||| |||||||| ||||||||||||||||||        |||||||||||||||||||| |||| ||  ||||  |||||||||||||    
T  44196174 ccaatccgtgataatttttatttgcggatatcatacatataattttttttatcttcttgaatatgtctaaaccgggca--gccgggtaaatacactagt 44196078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 377 - 492
Target Start/End: Original strand, 44226372 - 44226487
Alignment:
Q  377 tccaacaccttggaatcttgctgagaattccaaagtttctctaactgtcaattctccaatgtgaagatggttttgactgacataagcagcagttctttga 476  Q
    |||||| |||||| | |||||||||||  |||| ||||| || || |||| ||||||||| |||| ||  | ||| || | ||| |||||||||||||||    
T  44226372 tccaactccttggcaccttgctgagaaagccaaggtttccctcacagtcatttctccaatatgaacatcatgttggcttatataggcagcagttctttga 44226471  T
Q  477 ggtacaaactcattca 492  Q
    ||||||||||||||||    
T  44226472 ggtacaaactcattca 44226487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 21 - 62
Target Start/End: Complemental strand, 37200135 - 37200094
Alignment:
Q  21 ccaatccgtgataaattttatttacggatatcatacatataa 62  Q
    ||||||||||||||||||||||| |||||||||||| |||||    
T  37200135 ccaatccgtgataaattttatttgcggatatcatacttataa 37200094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 71 - 104
Target Start/End: Original strand, 43843653 - 43843686
Alignment:
Q  71 atcttcttgaatatgtctaacccggacaacgccg 104  Q
    ||||||||||||||||||||||||||||||||||    
T  43843653 atcttcttgaatatgtctaacccggacaacgccg 43843686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 71 - 120
Target Start/End: Complemental strand, 44719616 - 44719567
Alignment:
Q  71 atcttcttgaatatgtctaacccggacaacgccgaataaatacactagta 120  Q
    |||||||||||||| | ||||||| |||||||||| ||||||||||||||    
T  44719616 atcttcttgaatatatgtaacccgaacaacgccgagtaaatacactagta 44719567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 60; Significance: 2e-25; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 22 - 121
Target Start/End: Complemental strand, 22867666 - 22867567
Alignment:
Q  22 caatccgtgataaattttatttacggatatcatacatataannnnnnnnatcttcttgaatatgtctaacccggacaacgccgaataaatacactagtat 121  Q
    ||||||||||||||||||||||  |||||||||||||||||        ||||||||||||||||||||||||| ||||||||| |||||||||||||||    
T  22867666 caatccgtgataaattttatttgtggatatcatacatataattttttttatcttcttgaatatgtctaacccgggcaacgccgagtaaatacactagtat 22867567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 18 - 117
Target Start/End: Complemental strand, 52020749 - 52020651
Alignment:
Q  18 attccaatccgtgataaattttatttacggatatcatacatataannnnnnnnatcttcttgaatatgtctaacccggacaacgccgaataaatacacta 117  Q
    |||||||| ||| ||||||||||||| ||||||||||||||||||        ||||||||||||||||||||||||||||| |||| ||||||||||||    
T  52020749 attccaattcgtaataaattttatttgcggatatcatacatataattttttt-atcttcttgaatatgtctaacccggacaatgccggataaatacacta 52020651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 21 - 121
Target Start/End: Original strand, 39506330 - 39506430
Alignment:
Q  21 ccaatccgtgataaattttatttacggatatcatacatataannnnnnnnatcttcttgaatatgtctaacccggacaacgccgaataaatacactagta 120  Q
    ||||||| | ||||||||||||| ||||||||||||||||||        |||||||||||||| |||||||||| ||||||||  ||||||||||||||    
T  39506330 ccaatccataataaattttattttcggatatcatacatataattttttttatcttcttgaatatttctaacccgggcaacgccgggtaaatacactagta 39506429  T
Q  121 t 121  Q
    |    
T  39506430 t 39506430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 21 - 119
Target Start/End: Complemental strand, 34747816 - 34747719
Alignment:
Q  21 ccaatccgtgataaattttatttacggatatcatacatataannnnnnnnatcttcttgaatatgtctaacccggacaacgccgaataaatacactagt 119  Q
    ||||||||||||||||||||||| ||||||||||||| ||||        ||||||||||||||||||||||||  ||| |||| ||||||||||||||    
T  34747816 ccaatccgtgataaattttatttgcggatatcatacacataa-tttttttatcttcttgaatatgtctaacccgagcaatgccggataaatacactagt 34747719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 18 - 95
Target Start/End: Complemental strand, 11921620 - 11921544
Alignment:
Q  18 attccaatccgtgataaattttatttacggatatcatacatataannnnnnnnatcttcttgaatatgtctaacccgg 95  Q
    |||||||||||||||||||||||||| ||||||||||||||||||        |||||||||||||||||||||||||    
T  11921620 attccaatccgtgataaattttatttgcggatatcatacatataa-tttttttatcttcttgaatatgtctaacccgg 11921544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 22 - 119
Target Start/End: Original strand, 20582651 - 20582747
Alignment:
Q  22 caatccgtgataaattttatttacggatatcatacatataannnnnnnnatcttcttgaatatgtctaacccggacaacgccgaataaatacactagt 119  Q
    |||||||||||||||||||||| | ||||||||||||||||        ||||||||||||||||||||||||| ||||| ||  |||||||||||||    
T  20582651 caatccgtgataaattttatttgcagatatcatacatataa-tttttttatcttcttgaatatgtctaacccgggcaacgtcgggtaaatacactagt 20582747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 71 - 119
Target Start/End: Original strand, 28051764 - 28051812
Alignment:
Q  71 atcttcttgaatatgtctaacccggacaacgccgaataaatacactagt 119  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||    
T  28051764 atcttcttgaatatgtctaatccggacaacgccgaataaatacactagt 28051812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 21 - 118
Target Start/End: Original strand, 29018873 - 29018969
Alignment:
Q  21 ccaatccgtgataaattttatttacggatatcatacatataannnnnnnnatcttcttgaatatgtctaacccggacaacgccgaataaatacactag 118  Q
    ||||||||||||||||||||||| ||||||||||||| ||||        ||||||||||||||||||||||||| |||||| |  ||||||||||||    
T  29018873 ccaatccgtgataaattttatttgcggatatcatacaaataa-tttttttatcttcttgaatatgtctaacccgggcaacgctgggtaaatacactag 29018969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 23 - 115
Target Start/End: Original strand, 42737092 - 42737183
Alignment:
Q  23 aatccgtgataaattttatttacggatatcatacatataannnnnnnnatcttcttgaatatgtctaacccggacaacgccgaataaatacac 115  Q
    |||| |||||||||||||||| ||||||||||||||||||        |||||||||||||||| |||||||||||||||||  |||||||||    
T  42737092 aatctgtgataaattttatttgcggatatcatacatataattatttt-atcttcttgaatatgtgtaacccggacaacgccgggtaaatacac 42737183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 21 - 120
Target Start/End: Complemental strand, 7112292 - 7112194
Alignment:
Q  21 ccaatccgtgataaattttatttacggatatcatacatataannnnnnnnatcttcttgaatatgtctaacccggacaacgccgaataaatacactagta 120  Q
    ||||||| |||||||||||||||||| ||||||||||| |||        |||||||||||||||||||| |||| |||||| | |||||||||||||||    
T  7112292 ccaatccatgataaattttatttacgaatatcatacatgtaattttttt-atcttcttgaatatgtctaatccgggcaacgctggataaatacactagta 7112194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 18 - 121
Target Start/End: Original strand, 23616162 - 23616264
Alignment:
Q  18 attccaatccgtgataaattttatttacggatatcatacatataannnnnnnnatcttcttgaatatgtctaacccggacaacgccgaataaatacacta 117  Q
    |||||||||||||||||||||||||| |||||||||||||| |||        |||||||||||||||||||| || |  |||||||  |||||||||||    
T  23616162 attccaatccgtgataaattttatttgcggatatcatacatgtaa-tttttttatcttcttgaatatgtctaatccaggaaacgccgggtaaatacacta 23616260  T
Q  118 gtat 121  Q
    ||||    
T  23616261 gtat 23616264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 18 - 121
Target Start/End: Original strand, 23731883 - 23731985
Alignment:
Q  18 attccaatccgtgataaattttatttacggatatcatacatataannnnnnnnatcttcttgaatatgtctaacccggacaacgccgaataaatacacta 117  Q
    ||||||||| ||||||||||||| || ||||||||||||||||||        |||||||||||||||||||| |||  ||||||||  |||||||||||    
T  23731883 attccaatcggtgataaattttacttgcggatatcatacatataa-tttttttatcttcttgaatatgtctaatccgagcaacgccgggtaaatacacta 23731981  T
Q  118 gtat 121  Q
    ||||    
T  23731982 gtat 23731985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 21 - 119
Target Start/End: Original strand, 19082227 - 19082321
Alignment:
Q  21 ccaatccgtgataaattttatttacggatatcatacatataannnnnnnnatcttcttgaatatgtctaacccggacaacgccgaataaatacactagt 119  Q
    ||||||||||||||||||||||| | ||||||||||||||||        ||||| |||||||||| ||||||| |||||||||  |||||||||||||    
T  19082227 ccaatccgtgataaattttatttgcagatatcatacatataa----ttttatctttttgaatatgtataacccgaacaacgccgggtaaatacactagt 19082321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 21 - 119
Target Start/End: Original strand, 19130115 - 19130209
Alignment:
Q  21 ccaatccgtgataaattttatttacggatatcatacatataannnnnnnnatcttcttgaatatgtctaacccggacaacgccgaataaatacactagt 119  Q
    ||||||||||||||||||||||| | ||||||||||||||||        ||||| |||||||||| ||||||| |||||||||  |||||||||||||    
T  19130115 ccaatccgtgataaattttatttgcagatatcatacatataa----ttttatctttttgaatatgtataacccgaacaacgccgggtaaatacactagt 19130209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 21 - 119
Target Start/End: Complemental strand, 21443135 - 21443035
Alignment:
Q  21 ccaatccgtgataaattttatttacggatatcatacatataa--nnnnnnnnatcttcttgaatatgtctaacccggacaacgccgaataaatacactag 118  Q
    ||||||||||||||||||||||| ||||||||||||||||||          |||||||||||||||||||||||| | |||||||  || |||||||||    
T  21443135 ccaatccgtgataaattttatttgcggatatcatacatataattttttttttatcttcttgaatatgtctaacccgaaaaacgccgggtagatacactag 21443036  T
Q  119 t 119  Q
    |    
T  21443035 t 21443035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 18 - 121
Target Start/End: Original strand, 23647493 - 23647595
Alignment:
Q  18 attccaatccgtgataaattttatttacggatatcatacatataannnnnnnnatcttcttgaatatgtctaacccggacaacgccgaataaatacacta 117  Q
    |||||| ||||||||||||||||||| ||||||||||||||||||        ||||||||||||||||||||  | |  |||||||  |||||||||||    
T  23647493 attccattccgtgataaattttatttgcggatatcatacatataa-tttgtttatcttcttgaatatgtctaatgcaggaaacgccgggtaaatacacta 23647591  T
Q  118 gtat 121  Q
    ||||    
T  23647592 gtat 23647595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 71 - 119
Target Start/End: Original strand, 29019409 - 29019457
Alignment:
Q  71 atcttcttgaatatgtctaacccggacaacgccgaataaatacactagt 119  Q
    |||||||||||||||||||||||| ||||||||| ||||||| ||||||    
T  29019409 atcttcttgaatatgtctaacccgaacaacgccggataaatatactagt 29019457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 21 - 117
Target Start/End: Complemental strand, 13522326 - 13522231
Alignment:
Q  21 ccaatccgtgataaattttatttacggatatcatacatataannnnnnnnatcttcttgaatatgtctaacccggacaacgccgaataaatacacta 117  Q
    |||||||||||||||||||||||   ||||||||||||||||        |||||||||||||| | |||||||| ||||||||  |||||||||||    
T  13522326 ccaatccgtgataaattttatttgtagatatcatacatataa-gttttttatcttcttgaatatatgtaacccgggcaacgccgggtaaatacacta 13522231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 18 - 96
Target Start/End: Complemental strand, 37691643 - 37691566
Alignment:
Q  18 attccaatccgtgataaattttatttacggatatcatacatataannnnnnnnatcttcttgaatatgtctaacccgga 96  Q
    |||||||||||||||||||||||||| ||||||| ||| ||||||        ||||||||||||||||||||| ||||    
T  37691643 attccaatccgtgataaattttatttgcggatataatatatataa-tttttttatcttcttgaatatgtctaactcgga 37691566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 22 - 62
Target Start/End: Complemental strand, 5943035 - 5942995
Alignment:
Q  22 caatccgtgataaattttatttacggatatcatacatataa 62  Q
    ||||| |||||||||||||||| ||||||||||||||||||    
T  5943035 caatctgtgataaattttatttgcggatatcatacatataa 5942995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 21 - 53
Target Start/End: Complemental strand, 5296837 - 5296805
Alignment:
Q  21 ccaatccgtgataaattttatttacggatatca 53  Q
    ||||||||||||||||||||||| |||||||||    
T  5296837 ccaatccgtgataaattttatttgcggatatca 5296805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 81 - 121
Target Start/End: Original strand, 23728522 - 23728562
Alignment:
Q  81 atatgtctaacccggacaacgccgaataaatacactagtat 121  Q
    |||| ||||||||||||||||||||||| ||||| ||||||    
T  23728522 atatatctaacccggacaacgccgaatagatacattagtat 23728562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 8e-22; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 21 - 122
Target Start/End: Complemental strand, 2832382 - 2832281
Alignment:
Q  21 ccaatccgtgataaattttatttacggatatcatacatataannnnnnnnatcttcttgaatatgtctaacccggacaacgccgaataaatacactagta 120  Q
    |||||| ||||||| |||||||| ||||||||||||||||||        |||||||||||||||||||||||||||||||||  |||||||||| ||||    
T  2832382 ccaatctgtgataatttttatttgcggatatcatacatataattttttttatcttcttgaatatgtctaacccggacaacgccagataaatacaccagta 2832283  T
Q  121 tc 122  Q
    ||    
T  2832282 tc 2832281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 21 - 119
Target Start/End: Complemental strand, 29004590 - 29004493
Alignment:
Q  21 ccaatccgtgataaattttatttacggatatcatacatataannnnnnnnatcttcttgaatatgtctaacccggacaacgccgaataaatacactagt 119  Q
    ||||||||||||||||||||||| ||||||||||| ||||||        ||||||||||||||||||||||||| |||||||| ||||||||||||||    
T  29004590 ccaatccgtgataaattttatttgcggatatcataaatataattttttt-atcttcttgaatatgtctaacccgggcaacgccggataaatacactagt 29004493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 18 - 119
Target Start/End: Original strand, 36899398 - 36899498
Alignment:
Q  18 attccaatccgtgataaattttatttacggatatcatacatataannnnnnnnatcttcttgaatatgtctaacccggacaacgccgaataaatacacta 117  Q
    |||||||||||| ||||||||||||| ||||||||||||||||||        |||||||||||||||||||| |||| ||||||||  |||||||||||    
T  36899398 attccaatccgtaataaattttatttgcggatatcatacatataa-tttttttatcttcttgaatatgtctaatccgggcaacgccgggtaaatacacta 36899496  T
Q  118 gt 119  Q
    ||    
T  36899497 gt 36899498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 21 - 119
Target Start/End: Original strand, 36311829 - 36311926
Alignment:
Q  21 ccaatccgtgataaattttatttacggatatcatacatataannnnnnnnatcttcttgaatatgtctaacccggacaacgccgaataaatacactagt 119  Q
    ||||||||||||||||||||||| ||||||||||||||||||        |||||||||||||||||||||||||||| || ||  |||||||| ||||    
T  36311829 ccaatccgtgataaattttatttgcggatatcatacatataa-tttttttatcttcttgaatatgtctaacccggacagcgtcgggtaaatacattagt 36311926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 21 - 119
Target Start/End: Original strand, 36326038 - 36326135
Alignment:
Q  21 ccaatccgtgataaattttatttacggatatcatacatataannnnnnnnatcttcttgaatatgtctaacccggacaacgccgaataaatacactagt 119  Q
    ||||||||||||||||||||||| ||||||||||||||||||        |||||||||||||||||||||||||||| || ||  |||||||| ||||    
T  36326038 ccaatccgtgataaattttatttgcggatatcatacatataa-tttttttatcttcttgaatatgtctaacccggacagcgtcgggtaaatacattagt 36326135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 365 - 489
Target Start/End: Complemental strand, 2873103 - 2872979
Alignment:
Q  365 accatatctaggtccaacaccttggaatcttgctgagaattccaaagtttctctaactgtcaattctccaatgtgaagatggttttgactgacataagca 464  Q
    ||||||||| | |||||| |||||| | |||||||||||  |||| ||||| ||||| |||| ||||||||| |||| ||  | |||||| | ||| |||    
T  2873103 accatatcttgatccaactccttggcaccttgctgagaaagccaatgtttccctaacagtcatttctccaatatgaacatcatgttgactaatatatgca 2873004  T
Q  465 gcagttctttgaggtacaaactcat 489  Q
    |||||||||||||||||||| ||||    
T  2873003 gcagttctttgaggtacaaattcat 2872979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 21 - 121
Target Start/End: Original strand, 40696521 - 40696619
Alignment:
Q  21 ccaatccgtgataaattttatttacggatatcatacatataannnnnnnnatcttcttgaatatgtctaacccggacaacgccgaataaatacactagta 120  Q
    ||||||| ||||||||||||||| ||| ||||||||||||||        |||||||||||||||||||||||| | ||||||| |||||||||||||||    
T  40696521 ccaatccatgataaattttatttgcgg-tatcatacatataatttgttt-atcttcttgaatatgtctaacccgaataacgccggataaatacactagta 40696618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 21 - 120
Target Start/End: Complemental strand, 43318360 - 43318263
Alignment:
Q  21 ccaatccgtgataaattttatttacggatatcatacatataannnnnnnnatcttcttgaatatgtctaacccggacaacgccgaataaatacactagta 120  Q
    |||||| |||||||||||||||| || |||||||||||||||        ||||||||||||||||||||| ||||||||||||  ||||||||||||||    
T  43318360 ccaatctgtgataaattttatttgcg-atatcatacatataattttttt-atcttcttgaatatgtctaactcggacaacgccgggtaaatacactagta 43318263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 377 - 494
Target Start/End: Original strand, 2901734 - 2901851
Alignment:
Q  377 tccaacaccttggaatcttgctgagaattccaaagtttctctaactgtcaattctccaatgtgaagatggttttgactgacataagcagcagttctttga 476  Q
    |||||| |||||| | |||||||||||  |||| ||||| ||||| |||| ||||||||| |||| ||  | |||||| | ||| |||||||||||||||    
T  2901734 tccaacgccttggcaccttgctgagaaagccaatgtttccctaacagtcatttctccaatatgaacatcatgttgactaatatatgcagcagttctttga 2901833  T
Q  477 ggtacaaactcattcatc 494  Q
    |||||||| |||| ||||    
T  2901834 ggtacaaattcatccatc 2901851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 21 - 119
Target Start/End: Complemental strand, 6201712 - 6201615
Alignment:
Q  21 ccaatccgtgataaattttatttacggatatcatacatataannnnnnnnatcttcttgaatatgtctaacccggacaacgccgaataaatacactagt 119  Q
    ||||||||||||||||||||||| ||||||||||||||||||        ||||| ||||||||||||||||||  |||||| |  |||||||||||||    
T  6201712 ccaatccgtgataaattttatttgcggatatcatacatataa-tttttttatcttattgaatatgtctaacccgagcaacgctgggtaaatacactagt 6201615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 21 - 62
Target Start/End: Original strand, 36662198 - 36662239
Alignment:
Q  21 ccaatccgtgataaattttatttacggatatcatacatataa 62  Q
    ||||||||||||||||||||||| ||||||||||||||||||    
T  36662198 ccaatccgtgataaattttatttgcggatatcatacatataa 36662239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 21 - 62
Target Start/End: Original strand, 44519959 - 44520000
Alignment:
Q  21 ccaatccgtgataaattttatttacggatatcatacatataa 62  Q
    ||||||||||||||||||||||| ||||||||||||||||||    
T  44519959 ccaatccgtgataaattttatttgcggatatcatacatataa 44520000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 27 - 119
Target Start/End: Original strand, 3735969 - 3736060
Alignment:
Q  27 cgtgataaattttatttacggatatcatacatataannnnnnnnatcttcttgaatatgtctaacccggacaacgccgaataaatacactagt 119  Q
    ||||||||||||||||  ||||||||||||||||||        |||||||||||||||||||||||| | |||||||  |||||||| ||||    
T  3735969 cgtgataaattttattcgcggatatcatacatataattttttt-atcttcttgaatatgtctaacccgaataacgccgggtaaatacaatagt 3736060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 71 - 121
Target Start/End: Original strand, 4441167 - 4441217
Alignment:
Q  71 atcttcttgaatatgtctaacccggacaacgccgaataaatacactagtat 121  Q
    |||| |||||||||||||||||||| ||||||||  |||||||||||||||    
T  4441167 atctgcttgaatatgtctaacccgggcaacgccgggtaaatacactagtat 4441217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 381 - 494
Target Start/End: Complemental strand, 2883289 - 2883176
Alignment:
Q  381 acaccttggaatcttgctgagaattccaaagtttctctaactgtcaattctccaatgtgaagatggttttgactgacataagcagcagttctttgaggta 480  Q
    ||||||||| | |||||||||||  |||| ||||| || || |||| ||||||||| |||| ||  | |||||| | ||| ||||||||||| |||||||    
T  2883289 acaccttggcaccttgctgagaaagccaaggtttccctcacagtcatttctccaatatgaacatcatgttgactaatatatgcagcagttctctgaggta 2883190  T
Q  481 caaactcattcatc 494  Q
    |||| |||| ||||    
T  2883189 caaattcatccatc 2883176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 18 - 62
Target Start/End: Complemental strand, 728671 - 728627
Alignment:
Q  18 attccaatccgtgataaattttatttacggatatcatacatataa 62  Q
    ||||| ||| |||||||||||||||| ||||||||||||||||||    
T  728671 attccgatcggtgataaattttatttgcggatatcatacatataa 728627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 71 - 121
Target Start/End: Complemental strand, 19730856 - 19730806
Alignment:
Q  71 atcttcttgaatatgtctaacccggacaacgccgaataaatacactagtat 121  Q
    ||||||||||||| ||||||||||| ||||||||  |||||||| ||||||    
T  19730856 atcttcttgaataagtctaacccgggcaacgccgggtaaatacagtagtat 19730806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 74 - 120
Target Start/End: Complemental strand, 30260227 - 30260182
Alignment:
Q  74 ttcttgaatatgtctaacccggacaacgccgaataaatacactagta 120  Q
    ||||||||||||||||||||||||||||| |  ||||||||||||||    
T  30260227 ttcttgaatatgtctaacccggacaacgctg-gtaaatacactagta 30260182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 38055087 - 38055131
Alignment:
Q  18 attccaatccgtgataaattttatttacggatatcatacatataa 62  Q
    ||||||| |||||||||||||||||| |||||||| | |||||||    
T  38055087 attccaagccgtgataaattttatttgcggatatctttcatataa 38055131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 1e-20; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 21 - 121
Target Start/End: Complemental strand, 43512373 - 43512274
Alignment:
Q  21 ccaatccgtgataaattttatttacggatatcatacatataannnnnnnnatcttcttgaatatgtctaacccggacaacgccgaataaatacactagta 120  Q
    ||||||||||||||||||||||||||||||||| ||||||||        ||||||| |||||||||||| ||||||||||||  |||||||||||||||    
T  43512373 ccaatccgtgataaattttatttacggatatcaaacatataa-tttttttatcttctagaatatgtctaatccggacaacgccagataaatacactagta 43512275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 21 - 119
Target Start/End: Original strand, 42934635 - 42934732
Alignment:
Q  21 ccaatccgtgataaattttatttacggatatcatacatataannnnnnnnatcttcttgaatatgtctaacccggacaacgccgaataaatacactagt 119  Q
    ||||||||||||||||||||||| || |||||||||||||||        ||||||||||||||||||||| ||||||||| || ||||||||||||||    
T  42934635 ccaatccgtgataaattttatttgcgaatatcatacatataattttttt-atcttcttgaatatgtctaactcggacaacgtcggataaatacactagt 42934732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 18 - 119
Target Start/End: Original strand, 36633939 - 36634039
Alignment:
Q  18 attccaatccgtgataaattttatttacggatatcatacatataannnnnnnnatcttcttgaatatgtctaacccggacaacgccgaataaatacacta 117  Q
    |||||||||| | ||||||||||||| ||||||||||||||||||        ||||||||||||||||||||| ||| |||||||| ||||||||||||    
T  36633939 attccaatcccttataaattttatttgcggatatcatacatataattttttt-atcttcttgaatatgtctaactcgggcaacgccggataaatacacta 36634037  T
Q  118 gt 119  Q
    ||    
T  36634038 gt 36634039  T

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Target: chr3; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 21 - 102
Target Start/End: Original strand, 17476177 - 17476258
Alignment:
Q  21 ccaatccgtgataaattttatttacggatatcatacatataannnnnnnnatcttcttgaatatgtctaacccggacaacgc 102  Q
    ||||||||||||||||||||||| || |||||||||||||||        ||||||||||||||||||||||||| ||||||    
T  17476177 ccaatccgtgataaattttatttgcgaatatcatacatataattttttttatcttcttgaatatgtctaacccgggcaacgc 17476258  T

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Target: chr3; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 22 - 119
Target Start/End: Original strand, 34947976 - 34948073
Alignment:
Q  22 caatccgtgataaattttatttacggatatcatacatataannnnnnnnatcttcttgaatatgtctaacccggacaacgccgaataaatacactagt 119  Q
    |||||||||||||||||||||  ||||||||||||||||||        ||||||||||||||||||||||| | |||||||   |||||||||||||    
T  34947976 caatccgtgataaattttattcgcggatatcatacatataattttttttatcttcttgaatatgtctaacccaggcaacgccaggtaaatacactagt 34948073  T

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Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 18 - 117
Target Start/End: Original strand, 52107774 - 52107872
Alignment:
Q  18 attccaatccgtgataaattttatttacggatatcatacatataannnnnnnnatcttcttgaatatgtctaacccggacaacgccgaataaatacacta 117  Q
    |||||||||||  |||||||||||||| |||||||||||||||||        ||||||||||||||||||||||||  |||||||| |||||| |||||    
T  52107774 attccaatccgctataaattttatttatggatatcatacatataa-tttttttatcttcttgaatatgtctaacccgtgcaacgccggataaatgcacta 52107872  T

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Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 71 - 121
Target Start/End: Complemental strand, 3696282 - 3696232
Alignment:
Q  71 atcttcttgaatatgtctaacccggacaacgccgaataaatacactagtat 121  Q
    ||||||||||||||||||||| |||||||||||  ||||||||||||||||    
T  3696282 atcttcttgaatatgtctaactcggacaacgccagataaatacactagtat 3696232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 21 - 121
Target Start/End: Complemental strand, 45698420 - 45698321
Alignment:
Q  21 ccaatccgtgataaattttatttacggatatcatacatataannnnnnnnatcttcttgaatatgtctaacccggacaacgccgaataaatacactagta 120  Q
    |||||||||||||||||||||||  |||||||||||||||||        ||||||||||||||||||||| | | |||| | | |||||||||| ||||    
T  45698420 ccaatccgtgataaattttatttgtggatatcatacatataa-tttttttatcttcttgaatatgtctaactcaggcaacactggataaatacacaagta 45698322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 21 - 121
Target Start/End: Complemental strand, 45876427 - 45876326
Alignment:
Q  21 ccaatccgtgataaattttatttacggatatcatacatataannnnnnnnatcttcttgaatatg--tctaacccggacaacgccgaataaatacactag 118  Q
    |||||| |||||||||||||||| ||||||||||| ||||||        |||||||||||||||  ||||||| |||||| ||||  ||||||||||||    
T  45876427 ccaatctgtgataaattttatttgcggatatcatagatataa-tttttttatcttcttgaatatgtctctaaccaggacaaagccgggtaaatacactag 45876329  T
Q  119 tat 121  Q
    |||    
T  45876328 tat 45876326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 40320068 - 40320112
Alignment:
Q  18 attccaatccgtgataaattttatttacggatatcatacatataa 62  Q
    |||||||||| ||||||||||||||| ||||||| ||||||||||    
T  40320068 attccaatccatgataaattttatttgcggatattatacatataa 40320112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 71 - 116
Target Start/End: Complemental strand, 36980797 - 36980752
Alignment:
Q  71 atcttcttgaatatgtctaacccggacaacgccgaataaatacact 116  Q
    |||||||||| |||||||||||| |||||| ||| |||||||||||    
T  36980797 atcttcttgattatgtctaacccagacaacaccggataaatacact 36980752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 71 - 116
Target Start/End: Complemental strand, 37006236 - 37006191
Alignment:
Q  71 atcttcttgaatatgtctaacccggacaacgccgaataaatacact 116  Q
    |||||||||| |||||||||||| |||||| ||| |||||||||||    
T  37006236 atcttcttgattatgtctaacccagacaacaccggataaatacact 37006191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 72 - 120
Target Start/End: Complemental strand, 9598876 - 9598828
Alignment:
Q  72 tcttcttgaatatgtctaacccggacaacgccgaataaatacactagta 120  Q
    |||||||||||||||||||| ||| |||||||   ||||||||||||||    
T  9598876 tcttcttgaatatgtctaactcgggcaacgccaggtaaatacactagta 9598828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 8e-19; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 22 - 119
Target Start/End: Original strand, 35169976 - 35170072
Alignment:
Q  22 caatccgtgataaattttatttacggatatcatacatataannnnnnnnatcttcttgaatatgtctaacccggacaacgccgaataaatacactagt 119  Q
    |||||||||||||||||||||| ||||||||||||||||||        ||||||||||||||||||||| ||  |||||||| ||||||||||||||    
T  35169976 caatccgtgataaattttatttgcggatatcatacatataa-tttttttatcttcttgaatatgtctaactcgagcaacgccggataaatacactagt 35170072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 21 - 120
Target Start/End: Complemental strand, 19263144 - 19263046
Alignment:
Q  21 ccaatccgtgataaattttatttacggatatcatacatataannnnnnnnatcttcttgaatatgtctaacccggacaacgccgaataaatacactagta 120  Q
    |||||| |||||||||||||||| ||||||||||||||||||        ||||| ||||||||||| |||||||||||| ||| |||||||||||||||    
T  19263144 ccaatctgtgataaattttatttgcggatatcatacatataattctttt-atctttttgaatatgtcaaacccggacaacaccgcataaatacactagta 19263046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 18 - 118
Target Start/End: Original strand, 791362 - 791463
Alignment:
Q  18 attccaatccgtgataaattttatttacggatatcatacatataa-nnnnnnnnatcttcttgaatatgtctaacccggacaacgccgaataaatacact 116  Q
    |||||||||| ||||||||||||||| ||||||||||||||||||         |||||||||||||||||||| || |||||||| | |||||||||||    
T  791362 attccaatccatgataaattttatttgcggatatcatacatataatttttttttatcttcttgaatatgtctaatccagacaacgctggataaatacact 791461  T
Q  117 ag 118  Q
    ||    
T  791462 ag 791463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 18 - 120
Target Start/End: Original strand, 16467452 - 16467553
Alignment:
Q  18 attccaatccgtgataaattttatttacggatatcatacatataannnnnnnnatcttcttgaatatgtctaacccggacaacgccgaataaatacacta 117  Q
    |||||||||||||||||||||||||| || ||| |||||||||||        ||||||||||||||||||||||||| |||||||  |||||||||| |    
T  16467452 attccaatccgtgataaattttatttgcgaataacatacatataattttttt-atcttcttgaatatgtctaacccgggcaacgccagataaatacacca 16467550  T
Q  118 gta 120  Q
    |||    
T  16467551 gta 16467553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 21 - 117
Target Start/End: Original strand, 33053316 - 33053412
Alignment:
Q  21 ccaatccgtgataaattttatttacggatatcatacatataannnnnnnnatcttcttgaatatgtctaacccggacaacgccgaataaatacacta 117  Q
    |||||| |||||||||||||||| |||||||||| |||||||        |||||||| ||||||||||||||  ||||||| ||||||||||||||    
T  33053316 ccaatctgtgataaattttatttgcggatatcatgcatataattttttttatcttcttaaatatgtctaacccaaacaacgctgaataaatacacta 33053412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 29241212 - 29241256
Alignment:
Q  18 attccaatccgtgataaattttatttacggatatcatacatataa 62  Q
    |||||||||||||||||||||||||| ||||||||||||||||||    
T  29241212 attccaatccgtgataaattttatttgcggatatcatacatataa 29241256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 22 - 113
Target Start/End: Original strand, 7784311 - 7784401
Alignment:
Q  22 caatccgtgataaattttatttacggatatcatacatataannnnnnnnatcttcttgaatatgtctaacccggacaacgccgaataaatac 113  Q
    ||||||||||||||||||||||  |||||||||||||||||        ||||||||||||||||||||  |||||||| |||| |||||||    
T  7784311 caatccgtgataaattttatttgtggatatcatacatataa-tttttttatcttcttgaatatgtctaatacggacaaccccgagtaaatac 7784401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 71 - 119
Target Start/End: Original strand, 29241592 - 29241640
Alignment:
Q  71 atcttcttgaatatgtctaacccggacaacgccgaataaatacactagt 119  Q
    ||||||||||||||||||||||||| ||||||||  |||||||||||||    
T  29241592 atcttcttgaatatgtctaacccgggcaacgccgggtaaatacactagt 29241640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 74 - 121
Target Start/End: Original strand, 5250835 - 5250882
Alignment:
Q  74 ttcttgaatatgtctaacccggacaacgccgaataaatacactagtat 121  Q
    ||||||||||| |||||||||| ||||| || ||||||||||||||||    
T  5250835 ttcttgaatatatctaacccgggcaacgtcggataaatacactagtat 5250882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 62
Target Start/End: Original strand, 294810 - 294851
Alignment:
Q  21 ccaatccgtgataaattttatttacggatatcatacatataa 62  Q
    |||||| |||||||||||||||| ||||| ||||||||||||    
T  294810 ccaatctgtgataaattttatttgcggatttcatacatataa 294851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 62
Target Start/End: Original strand, 6829315 - 6829356
Alignment:
Q  21 ccaatccgtgataaattttatttacggatatcatacatataa 62  Q
    ||||||| | |||||||||||||||| |||||||||||||||    
T  6829315 ccaatccataataaattttatttacgaatatcatacatataa 6829356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 16 - 120
Target Start/End: Complemental strand, 216678 - 216575
Alignment:
Q  16 caattccaatccgtgataaattttatttacggatatcatacatataannnnnnnnatcttcttgaatatgtctaacccggacaacgccgaataaatacac 115  Q
    |||||||||||||||||||||||||||| || ||||||||| |||||        ||||||||||||||||||||| ||  |||| |||  |||||||||    
T  216678 caattccaatccgtgataaattttatttgcgaatatcatacttataa-tttttttatcttcttgaatatgtctaactcgcgcaacaccgggtaaatacac 216580  T
Q  116 tagta 120  Q
    |||||    
T  216579 tagta 216575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 22 - 62
Target Start/End: Complemental strand, 31297891 - 31297851
Alignment:
Q  22 caatccgtgataaattttatttacggatatcatacatataa 62  Q
    |||||||||||||||||||||| ||||||||||||||||||    
T  31297891 caatccgtgataaattttatttgcggatatcatacatataa 31297851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 71 - 119
Target Start/End: Complemental strand, 120243 - 120195
Alignment:
Q  71 atcttcttgaatatgtctaacccggacaacgccgaataaatacactagt 119  Q
    ||||||||||||||||||||||||| |||| |||  |||||||||||||    
T  120243 atcttcttgaatatgtctaacccgggcaacaccgggtaaatacactagt 120195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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